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BaseInfo

ncRNA ID	novel_bra_miR339
Species	Brassica rapa
Class	miRNA
Genome position	ChrA2:15976033-15976170 [+]
Reference genome	Brapa_1.0
Source	SRR1592476
Length	21
Mature sequence(if miRNA)	1 - AUAUAUGUGUAUAUAAUUGUG - 21
Stem-loop(if miRNA)	--AUA            A         CC                 A  AAU  -   A         AC      UAUGUGUAUAUA UUGUGGGAU  ACUAAAUAGUGUAGAAC UC   CC AAA GUUCUAAAA  A      |||||||||||| |||||||||  ||||||||||||||||| ||   || ||| |||||||||  A      AUACACAUAUAU AACACCCUG  UGAUUUAUCACAUUUUG AG   GG UUU CAAGAUUUU  A AACAG            C         -A                 -  GAU  A   C         CA
Stem-loop sequence	AUAUAUGUGUAUAUAAUUGUGGGAUCCACUAAAUAGUGUAGAACAUCAAUCCAAAAGUUCUAAAAACAAAACUUUUAGAACCUUUAGGUAGGAGUUUUACACUAUUUAGUAGUCCCACAACUAUAUACACAUAGACAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_009153781.2	ncRNA:21   GUGUUAAUAUAUGUGUAUAUA   1   =|||*|||||||=|||||||| targets:1843   UACAUUUAUAUAUACAUAUAU   1863 Target Full Sequence	2.5	PREDICTED: Brassica rapa nodulation receptor kinase (LOC103875279), mRNA	nodulation receptor kinase(LOC103875279)	coding protein	psRNATarget
XM_009147760.2	ncRNA:21   GUGUUAAUAUAUGUGUAUAUA   1   =*|||*||||||=|||||||| targets:71   UUCAAAUAUAUAUACAUAUAU   91 Target Full Sequence	2.5	PREDICTED: Brassica rapa CBL-interacting serine/threonine-protein kinase 1 (LOC103869680), mRNA	CBL-interacting serine/threonine-protein kinase 1(LOC103869680)	coding protein	psRNATarget
XM_009147765.2	ncRNA:21   GUGUUAAUAUAUGUGUAUAUA   1   *|*|||||||||||||||*|| targets:288   AAAAAUUAUAUACACAUACAU   308 Target Full Sequence	2.5	PREDICTED: Brassica rapa probable receptor-like protein kinase At3g17420 (LOC103869687), mRNA	probable receptor-like protein kinase At3g17420(LOC103869687)	coding protein	psRNATarget