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BaseInfo

ncRNA ID	ath-miR5018
Species	Arabidopsis thaliana
Class	miRNA
Genome position	chr1:24543740-24544014 [-]
Reference genome	TAIR10
Source	miRBase
Length	24
Mature sequence(if miRNA)	222 - UUAAAGCUCCACCAUGAGUCCAAU - 245
Stem-loop(if miRNA)	C          GUCC             C       C        C         U            C          C C    CUA          AAA       UU  A     A  UG UAUGACAACUUCCA CAAUUGGUAU    CUUAAAGCUCCAC AUGAGUC AAUAUCUA GACAGUUCU GUAGAAGUAGUG GGUUGAGUCU A UGUA   GUUGUAAUAA   AAAACUU  UG UGUCA GA  U |||||||||||||| ||||||||||    ||||||||||||| ||||||| |||||||| ||||||||| |||||||||||| |||||||||| | ||||   ||||||||||   |||||||  || ||||| || AUGCUGUUGAAGGU GUUAACCAUG    GAAUUUUGAGGUG UGCUCAG UUAUAGAU CUGUUAAGA CGUCUUCAUCGC CCAACUCAGA U ACAU   CAAUAUUAUU   UUUUGAA  AC AUAGU CU  G               A          AAAA             A       A        A         U            U          A A    CCA          --G       UC  A     -  UA
Stem-loop sequence	UAUGACAACUUCCACCAAUUGGUAUGUCCCUUAAAGCUCCACCAUGAGUCCAAUAUCUACGACAGUUCUUGUAGAAGUAGUGCGGUUGAGUCUCACUGUACUAGUUGUAAUAAAAAAAAACUUUUUGAUGUCAAGAUGUGAUUCUGAUAACACUAAGUUUUGUUAUUAUAACACCUACAAUAAGACUCAACCUCGCUACUUCUGCUAGAAUUGUCAUAGAUAUUAGACUCGUAGUGGAGUUUUAAGAAAAGUACCAAUUGAUGGAAGUUGUCGUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
NM_118223.1	ncRNA:24   UAACCUGAGUACCACCUCGAAAUU   1   |||||||||||||||||||||||| targets:170   AUUGGACUCAUGGUGGAGCUUUAA   193 Target Full Sequence	0.0	Arabidopsis thaliana Dof-type zinc finger domain-containing protein (DOF4.4), partial mRNA	Dof-type zinc finger domain-containing protein(DOF4.4)	coding protein	psRNATarget
NM_118221.1	ncRNA:24   UAACCUGAGUACCACCUCGAAAUU   1   =|||||||||||||||||=||||| targets:161   GUUGGACUCAUGGUGGAGUUUUAA   184 Target Full Sequence	1.5	Arabidopsis thaliana Dof-type zinc finger domain-containing protein (ATDOF4.2), partial mRNA	Dof-type zinc finger domain-containing protein(ATDOF4.2)	coding protein	psRNATarget
NM_118222.1	ncRNA:24   UA--ACCUGAGUACCACCUCGAAAUU   1   ||--||||||||||||||=||||||| targets:171   AUACUGGACUCAUGGUGGGGCUUUAA   196 Target Full Sequence	1.5	Arabidopsis thaliana Dof-type zinc finger domain-containing protein (DOF4.3), partial mRNA	Dof-type zinc finger domain-containing protein(DOF4.3)	coding protein	psRNATarget
NM_118226.1	ncRNA:24   UA--ACCUGAGUACCACCUCGAAAUU   1   ||--||||||||||||||=||||||| targets:171   AUACUGGACUCAUGGUGGGGCUUUAA   196 Target Full Sequence	1.5	Arabidopsis thaliana Dof-type zinc finger domain-containing protein (DOF4.5), partial mRNA	Dof-type zinc finger domain-containing protein(DOF4.5)	coding protein	psRNATarget

Reference

1	PMID:21357774 "MicroRNA activity in the Arabidopsis male germline"; Borges F, Pereira PA, Slotkin RK, Martienssen RA, Becker JD; J Exp Bot. 62:1611-1620(2011).