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BaseInfo

ncRNA ID novel_bra_miR331
Species Brassica rapa
Class miRNA
Genome position ChrA1:24206393-24206448 [-]
Reference genome Brapa_1.0
Source SRR1592476
Length 24
Mature sequence(if miRNA) 33 - GAAGGAUGGUUGCUAGAUCUAGGG - 56
Stem-loop(if miRNA) --   GG     UG    -    A    U
  GAA  AUGGU  CUAG AUCU GGGU U
  |||  |||||  |||| |||| ||||
  CUU  UAUUA  GGUU UGGA CUUA C
UC   AA     GA    G    -    U
Stem-loop sequence GAAGGAUGGUUGCUAGAUCUAGGGUUUCUAUUCAGGUGUUGGAGAUUAUAAUUCCU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_009127407.1
ncRNA:24   GGG--AUCUAGA-UCGUUGGUAGGAAG   1
  =||--|=||*||-||||||||||||||
targets:157   UCCAGUGGACCUUAGCAACCAUCCUUC   183

3.0 PREDICTED: Brassica rapa TATA-box-binding protein 1-like (LOC103850628), mRNA TATA-box-binding protein 1-like(LOC103850628) coding protein psRNATarget