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BaseInfo

ncRNA ID	novel_bra_miR330
Species	Brassica rapa
Class	miRNA
Genome position	ChrA1:24583795-24583901 [+]
Reference genome	Brapa_1.0
Source	SRR1592476
Length	21
Mature sequence(if miRNA)	1 - UGAGCCAAGGAUGACUUGCCG - 21
Stem-loop(if miRNA)	--U         A           UUUAUAU  -   C  UUCAUGAACCAUUGUUUU    GAGCCAAGG UGACUUGCCGG       AC AAU GG                  G    ||||||||| |||||||||||       || ||| ||    CUCGGUUCC GUUGAACGGUC       UG GUU GG                  G UGU         A           -------  U   -  UUUCCCGACUCAUACACU
Stem-loop sequence	UGAGCCAAGGAUGACUUGCCGGUUUAUAUACAAUCGGUUCAUGAACCAUUGUUUUGGUCACAUACUCAGCCCUUUGGUUGUGUCUGGCAAGUUGACCUUGGCUCUGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_009136601.1	ncRNA:21   GCCGUUCAGUAGGAACCGAGU   1   =|||||*|||||=|||||||| targets:1202   UGGCAACUCAUCUUUGGCUCA   1222 Target Full Sequence	2.5	PREDICTED: Brassica rapa nuclear transcription factor Y subunit A-2-like (LOC103859112), transcript variant X1, mRNA	nuclear transcription factor Y subunit A-2-like(LOC103859112)	coding protein	psRNATarget
XM_018656996.1	ncRNA:21   GCCGUUCAGUAGGAACCGAGU   1   =|||||*|||||=|||||||| targets:1260   UGGCAACUCAUCUUUGGCUCA   1280 Target Full Sequence	2.5	PREDICTED: Brassica rapa nuclear transcription factor Y subunit A-2-like (LOC103859112), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_009124011.2	ncRNA:21   GCCGUUCAGUAGGAACCGAGU   1   *|||||*|||||=|||||||| targets:1123   AGGCAACUCAUCUUUGGCUCA   1143 Target Full Sequence	2.5	PREDICTED: Brassica rapa nuclear transcription factor Y subunit A-10 (LOC103846990), transcript variant X4, mRNA	nuclear transcription factor Y subunit A-10(LOC103846990)	coding protein	psRNATarget
XM_009124010.2	ncRNA:21   GCCGUUCAGUAGGAACCGAGU   1   *|||||*|||||=|||||||| targets:1125   AGGCAACUCAUCUUUGGCUCA   1145 Target Full Sequence	2.5	PREDICTED: Brassica rapa nuclear transcription factor Y subunit A-10 (LOC103846990), transcript variant X3, mRNA	nuclear transcription factor Y subunit A-10(LOC103846990)	coding protein	psRNATarget
XM_009124009.2	ncRNA:21   GCCGUUCAGUAGGAACCGAGU   1   *|||||*|||||=|||||||| targets:1130   AGGCAACUCAUCUUUGGCUCA   1150 Target Full Sequence	2.5	PREDICTED: Brassica rapa nuclear transcription factor Y subunit A-10 (LOC103846990), transcript variant X2, mRNA	nuclear transcription factor Y subunit A-10(LOC103846990)	coding protein	psRNATarget
XM_009124007.2	ncRNA:21   GCCGUUCAGUAGGAACCGAGU   1   *|||||*|||||=|||||||| targets:1133   AGGCAACUCAUCUUUGGCUCA   1153 Target Full Sequence	2.5	PREDICTED: Brassica rapa nuclear transcription factor Y subunit A-10 (LOC103846990), transcript variant X1, mRNA	nuclear transcription factor Y subunit A-10(LOC103846990)	coding protein	psRNATarget
XM_009126618.2	ncRNA:21   GCCGUUCAGUAGGAACCGAGU   1   *|||||*|||||=|||||||| targets:1135   AGGCAAAUCAUCUUUGGCUCA   1155 Target Full Sequence	2.5	PREDICTED: Brassica rapa nuclear transcription factor Y subunit A-2-like (LOC103849907), transcript variant X3, mRNA	nuclear transcription factor Y subunit A-2-like(LOC103849907)	coding protein	psRNATarget
XM_009126617.2	ncRNA:21   GCCGUUCAGUAGGAACCGAGU   1   *|||||*|||||=|||||||| targets:1143   AGGCAAAUCAUCUUUGGCUCA   1163 Target Full Sequence	2.5	PREDICTED: Brassica rapa nuclear transcription factor Y subunit A-2-like (LOC103849907), transcript variant X2, mRNA	nuclear transcription factor Y subunit A-2-like(LOC103849907)	coding protein	psRNATarget
XM_009126616.2	ncRNA:21   GCCGUUCAGUAGGAACCGAGU   1   *|||||*|||||=|||||||| targets:1143   AGGCAAAUCAUCUUUGGCUCA   1163 Target Full Sequence	2.5	PREDICTED: Brassica rapa nuclear transcription factor Y subunit A-2-like (LOC103849907), transcript variant X1, mRNA	nuclear transcription factor Y subunit A-2-like(LOC103849907)	coding protein	psRNATarget