ncRNA ID | novel_bra_miR325 |
Species | Brassica rapa |
Class | miRNA |
Genome position | ChrA1:1484721-1484937 [+] |
Reference genome | Brapa_1.0 |
Source | SRR1592476 |
Length | 24 |
Mature sequence(if miRNA) | 194 - AGAGUGUGAUUGGAGAUGGUCUAA - 217 |
Stem-loop(if miRNA) |
--   G         AG         UU           A     A                                                                 AGA CAUCUCCAA  GCACUCUAU  UUUCCUCUAUA UUUAC CUAAAAUAGAGUAACUCUAUUAUAGAGUUGAAUUUGCUCCAAUGGUUCACUCUAUAAUAGAGU   ||| |||||||||  |||||||||  ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||U   UCU GUAGAGGUU  UGUGAGAUA  AAAGGAGAUAU AAGUG GAUUUUAUCUCAUUGAGAUAAUAUCUCAACUUAAACGAGGUUACCAAGUGAGAUAUUAUCUCA AA   G         AG         UU           A     A                                                               |
Stem-loop sequence | AGAGCAUCUCCAAAGGCACUCUAUUUUUUCCUCUAUAAUUUACACUAAAAUAGAGUAACUCUAUUAUAGAGUUGAAUUUGCUCCAAUGGUUCACUCUAUAAUAGAGUUACUCUAUUAUAGAGUGAACCAUUGGAGCAAAUUCAACUCUAUAAUAGAGUUACUCUAUUUUAGAGUGAAAUAUAGAGGAAAUUAUAGAGUGUGAUUGGAGAUGGUCUAA |