| ncRNA ID | novel_bra_miR317 |
| Species | Brassica rapa |
| Class | miRNA |
| Genome position | ChrA9:22510670-22510831 [+] |
| Reference genome | Brapa_1.0 |
| Source | SRR1592476;SRR1776880;SRR1776889;SRR1776899;SRR1777714 |
| Length | 24 |
| Mature sequence(if miRNA) | 139 - AAAUUAUGGAGUGGGGAUGGAGAU - 162 |
| Stem-loop(if miRNA) |
-- -- C U GA G G C A A U CUCCAUCUUCACUCCAUAAUUUA CUG AAAAUGG GUG AAAUGGAGUA UGAA AAA AAA AAGUGAUU CUCCA A ||||||||||||||||||||||| ||| ||||||| ||| |||||||||| |||| ||| ||| |||||||| ||||| GAGGUAGGGGUGAGGUAUUAAAU GGU UUUUACU CAC UUUACCUCAU ACUU UUU UUU UUUAUUAA GAGGU A UA AA U U UC - G - A A A |
| Stem-loop sequence | CUCCAUCUUCACUCCAUAAUUUACUGCAAAAUGGUGUGGAAAAUGGAGUAGUGAAGAAACAAAAAAGUGAUUACUCCAUAAAUGGAGAAAUUAUUUAUUUUUUGUUCAUACUCCAUUUCUCACUUCAUUUUUUGGAAUAAAUUAUGGAGUGGGGAUGGAGAU |
| Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| XM_018655293.1 |
|
1.0 | PREDICTED: Brassica rapa 2-hydroxy-6-oxononadienedioate/2-hydroxy-6-oxononatrienedioate hydrolase 1-like (LOC103845591), transcript variant X3, mRNA | NA | coding protein | psRNATarget | |||||||||
| XM_009137393.2 |
|
2.0 | PREDICTED: Brassica rapa zinc finger protein AZF2-like (LOC103859816), mRNA | zinc finger protein AZF2-like(LOC103859816) | coding protein | psRNATarget |