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BaseInfo

ncRNA ID novel_bra_miR316
Species Brassica rapa
Class miRNA
Genome position ChrA9:21935693-21935772 [+]
Reference genome Brapa_1.0
Source SRR1592476
Length 24
Mature sequence(if miRNA) 57 - AUUCCUAUAGAAUAAUCGAUCGAC - 80
Stem-loop(if miRNA) --        -      AUC     A        -CA   C
  CGAUCGAU AUUCUA   GAAUA UUGGUCGA   GUU A
  |||||||| ||||||   ||||| ||||||||   ||| A
  GCUAGCUA UAAGAU   CUUAU AGCUAGUU   UAA C
CA        A      AUC     -        AUG   A
Stem-loop sequence CGAUCGAUAUUCUAAUCGAAUAAUUGGUCGACAGUUCAACAAAUGUAUUGAUCGAUAUUCCUAUAGAAUAAUCGAUCGAC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_009117370.2
ncRNA:24   CAGCUAGCUAAUAAGAUAUCCUUA   1
  |***|||||**|||||||||||||
targets:890   GGGAAUCGAAAAUUCUAUAGGAAU   913

2.0 PREDICTED: Brassica rapa transcription factor MYB3 (LOC103840842), mRNA transcription factor MYB3(LOC103840842) coding protein psRNATarget