ncRNA ID | novel_bra_miR316 |
Species | Brassica rapa |
Class | miRNA |
Genome position | ChrA9:21935693-21935772 [+] |
Reference genome | Brapa_1.0 |
Source | SRR1592476 |
Length | 24 |
Mature sequence(if miRNA) | 57 - AUUCCUAUAGAAUAAUCGAUCGAC - 80 |
Stem-loop(if miRNA) |
--        -      AUC     A        -CA   C   CGAUCGAU AUUCUA   GAAUA UUGGUCGA   GUU A   |||||||| ||||||   ||||| ||||||||   ||| A   GCUAGCUA UAAGAU   CUUAU AGCUAGUU   UAA C CA        A      AUC     -        AUG   A |
Stem-loop sequence | CGAUCGAUAUUCUAAUCGAAUAAUUGGUCGACAGUUCAACAAAUGUAUUGAUCGAUAUUCCUAUAGAAUAAUCGAUCGAC |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
XM_009117370.2 |
|
2.0 | PREDICTED: Brassica rapa transcription factor MYB3 (LOC103840842), mRNA | transcription factor MYB3(LOC103840842) | coding protein | psRNATarget |