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BaseInfo

ncRNA ID	novel_bra_miR314
Species	Brassica rapa
Class	miRNA
Genome position	ChrA9:2259092-2259204 [+]
Reference genome	Brapa_1.0
Source	SRR1592476
Length	24
Mature sequence(if miRNA)	90 - AAAAGUUAAGAGACGGAUUCUUAU - 113
Stem-loop(if miRNA)	--       AA           A   C      AG   UA        CU    AC   AAGAAUC  UCUCUUAACUU UAA UAAAAA  CUA  AAUCGGUU  UAAA  U   |||||||  ||||||||||| ||| ||||||  |||  ||||||||  ||||  C   UUCUUAG  AGAGAAUUGAA AUU AUUUUU  GAU  UUGGCUAA  AUUU  U UA       GC           A   A      CU   CC        AG    AU
Stem-loop sequence	AAGAAUCAAUCUCUUAACUUAUAACUAAAAAAGCUAUAAAUCGGUUCUUAAAACUCUUAUUUAGAAAUCGGUUCCUAGUCUUUUUAAUUAAAAGUUAAGAGACGGAUUCUUAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_009142331.1	ncRNA:24   UAUUCUUAGGCAGAGAAUUGAAAA   1   ||||-|||*|||||||||||*||| targets:2782   AUAA-AAUACGUCUCUUAACGUUU   2804 Target Full Sequence	2.5	PREDICTED: Brassica rapa glutamate receptor 2.2-like (LOC103864578), transcript variant X1, mRNA	glutamate receptor 2.2-like(LOC103864578)	coding protein	psRNATarget
XM_009145696.2	ncRNA:24   UAUUCUUAGGCAGAGAAUUGAAAA   1   ***|**||||||=||||||||||| targets:934   UCCAUCAUCCGUUUCUUAACUUUU   957 Target Full Sequence	2.5	PREDICTED: Brassica rapa cyclin-dependent kinase inhibitor 4-like (LOC103867616), transcript variant X2, mRNA	cyclin-dependent kinase inhibitor 4-like(LOC103867616)	coding protein	psRNATarget
XM_009145695.2	ncRNA:24   UAUUCUUAGGCAGAGAAUUGAAAA   1   ***|**||||||=||||||||||| targets:926   UCCAUCAUCCGUUUCUUAACUUUU   949 Target Full Sequence	2.5	PREDICTED: Brassica rapa cyclin-dependent kinase inhibitor 4-like (LOC103867616), transcript variant X1, mRNA	cyclin-dependent kinase inhibitor 4-like(LOC103867616)	coding protein	psRNATarget
XM_009118181.2	ncRNA:24   UAUUCUUAGGCAGAGAAUUGAAAA   1   |*||*|||||*|*||||||||||| targets:9   AAAAAAAUCCAUAUCUUAACUUUU   32 Target Full Sequence	2.5	PREDICTED: Brassica rapa glucan endo-1,3-beta-glucosidase, acidic isoform-like (LOC103841629), mRNA	glucan endo-1,3-beta-glucosidase, acidic isoform-like(LOC103841629)	coding protein	psRNATarget
XM_009149493.2	ncRNA:24   UAUUCUUAGGCAGAGAAUUGAAAA   1   =***|*=||||||||||||||||* targets:992   GCUUGUGUCCGUCUCUUAACUUUG   1015 Target Full Sequence	3.0	PREDICTED: Brassica rapa G-type lectin S-receptor-like serine/threonine-protein kinase At1g34300 (LOC103871267), transcript variant X1, mRNA	G-type lectin S-receptor-like serine/threonine-protein kinase At1g34300(LOC103871267)	coding protein	psRNATarget
XM_009149494.2	ncRNA:24   UAUUCUUAGGCAGAGAAUUGAAAA   1   =***|*=||||||||||||||||* targets:992   GCUUGUGUCCGUCUCUUAACUUUG   1015 Target Full Sequence	3.0	PREDICTED: Brassica rapa G-type lectin S-receptor-like serine/threonine-protein kinase At1g34300 (LOC103871267), transcript variant X2, mRNA	G-type lectin S-receptor-like serine/threonine-protein kinase At1g34300(LOC103871267)	coding protein	psRNATarget