| ncRNA ID | novel_bra_miR309 |
| Species | Brassica rapa |
| Class | miRNA |
| Genome position | ChrA1:12101208-12101333 [+] |
| Reference genome | Brapa_1.0 |
| Source | SRR1125021 |
| Length | 21 |
| Mature sequence(if miRNA) | 106 - AGAGAUCCGCAUUUAUCAUGC - 126 |
| Stem-loop(if miRNA) |
-- U AG G UAAUAAUAAGAUAU C AC AA AUGAU AAUGCG UCUCUUAGGGUGGG UUCUUAGCU GU UCUUA UUUU C ||||| |||||| |||||||||||||| ||||||||| || ||||| |||| U UACUA UUACGC AGAGAAUCUCACCC AAGAAUCGG CA AGAAU AAAA A CG U CU - -------------- A CA AA |
| Stem-loop sequence | AUGAUUAAUGCGAGUCUCUUAGGGUGGGGUUCUUAGCUUAAUAAUAAGAUAUGUCUCUUAACUUUUAACUAAAAAAAACUAAGAAACGGCUAAGAACCCACUCUAAGAGAUCCGCAUUUAUCAUGC |
| Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| XM_009142749.2 |
|
2.5 | PREDICTED: Brassica rapa methylsterol monooxygenase 2-1 (LOC103864965), mRNA | methylsterol monooxygenase 2-1(LOC103864965) | coding protein | psRNATarget | |||||||||
| XM_009136269.2 |
|
2.5 | PREDICTED: Brassica rapa BTB/POZ domain-containing protein POB1 (LOC103858841), mRNA | BTB/POZ domain-containing protein POB1(LOC103858841) | coding protein | psRNATarget |