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BaseInfo

ncRNA ID	novel_bra_miR308
Species	Brassica rapa
Class	miRNA
Genome position	ChrA9:11985435-11985503 [-]
Reference genome	Brapa_1.0
Source	SRR1592476;SRR1776877;SRR1776899;SRR1777714;SRR1485281
Length	24
Mature sequence(if miRNA)	46 - AACUAAAAAAACUAAGAACCGGCU - 69
Stem-loop(if miRNA)	--          A                  UUA   AACUAAAAAA CUAAGAACCGGCUUUUAA   A   |||||||||| ||||||||||||||||||   A   UUGAUUUUUU GAUUCUUGGCCGGGGAUU   A AA          C                  UAU
Stem-loop sequence	AACUAAAAAAACUAAGAACCGGCUUUUAAUUAAAAUAUUUAGGGGCCGGUUCUUAGCUUUUUUAGUUAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_009108522.2	ncRNA:24   UCGGCCAAGAAUCAAAAAAAUCAA   1   |**=**||=||||||||||||||| targets:897   AUAUUUUUUUUAGUUUUUUUAGUU   920 Target Full Sequence	2.0	PREDICTED: Brassica rapa adenine phosphoribosyltransferase 2-like (LOC103832504), transcript variant X6, mRNA	adenine phosphoribosyltransferase 2-like(LOC103832504)	coding protein	psRNATarget
XM_009108521.2	ncRNA:24   UCGGCCAAGAAUCAAAAAAAUCAA   1   |**=**||=||||||||||||||| targets:863   AUAUUUUUUUUAGUUUUUUUAGUU   886 Target Full Sequence	2.0	PREDICTED: Brassica rapa adenine phosphoribosyltransferase 2-like (LOC103832504), transcript variant X2, mRNA	adenine phosphoribosyltransferase 2-like(LOC103832504)	coding protein	psRNATarget
XM_018653216.1	ncRNA:24   UCGGCCAAGAAUCAAAAAAAUCAA   1   |**=**||=||||||||||||||| targets:863   AUAUUUUUUUUAGUUUUUUUAGUU   886 Target Full Sequence	2.0	PREDICTED: Brassica rapa adenine phosphoribosyltransferase 2-like (LOC103832504), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_018653218.1	ncRNA:24   UCGGCCAAGAAUCAAAAAAAUCAA   1   |**=**||=||||||||||||||| targets:863   AUAUUUUUUUUAGUUUUUUUAGUU   886 Target Full Sequence	2.0	PREDICTED: Brassica rapa adenine phosphoribosyltransferase 2-like (LOC103832504), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_018653217.1	ncRNA:24   UCGGCCAAGAAUCAAAAAAAUCAA   1   |**=**||=||||||||||||||| targets:863   AUAUUUUUUUUAGUUUUUUUAGUU   886 Target Full Sequence	2.0	PREDICTED: Brassica rapa adenine phosphoribosyltransferase 2-like (LOC103832504), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_018653219.1	ncRNA:24   UCGGCCAAGAAUCAAAAAAAUCAA   1   |**=**||=||||||||||||||| targets:863   AUAUUUUUUUUAGUUUUUUUAGUU   886 Target Full Sequence	2.0	PREDICTED: Brassica rapa adenine phosphoribosyltransferase 2-like (LOC103832504), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_009131757.2	ncRNA:24   UC--GGCCAAGAAUCAAAAAAAUCAA   1   ||--||||||=||||*|||||||||| targets:520   AGAACCGGUUUUUAGCUUUUUUAGUU   545 Target Full Sequence	2.5	PREDICTED: Brassica rapa uncharacterized LOC103854791 (LOC103854791), mRNA	uncharacterized LOC103854791(LOC103854791)	coding protein	psRNATarget
XM_009151904.2	ncRNA:24   UCGGCCAAGAAUCAAAAAAAUCAA   1   ||*||*|||||||*|||||||||| targets:1290   AGACGUUUCUUAGAUUUUUUAGUU   1313 Target Full Sequence	2.5	PREDICTED: Brassica rapa UPF0160 protein (LOC103873492), mRNA	UPF0160 protein(LOC103873492)	coding protein	psRNATarget
XM_009114115.2	ncRNA:24   UCGGCCAAGAAUCAAAAAAAUCAA   1   ***|***|=||||||||||||||| targets:977   CUACAAAUUUUAGUUUUUUUAGUU   1000 Target Full Sequence	3.0	PREDICTED: Brassica rapa ethylene-responsive transcription factor ERF010-like (LOC103837736), mRNA	ethylene-responsive transcription factor ERF010-like(LOC103837736)	coding protein	psRNATarget