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BaseInfo

ncRNA ID	novel_bra_miR304
Species	Brassica rapa
Class	miRNA
Genome position	ChrA9:36931984-36932056 [-]
Reference genome	Brapa_1.0
Source	SRR1592476
Length	24
Mature sequence(if miRNA)	50 - AACUAAAAAAACUAAGAACCGGUU - 73
Stem-loop(if miRNA)	--          AC   G              GUCC   AACUAAAAAA  UAA AACCGGUUCUUAAA    U   ||||||||||  ||| ||||||||||||||    U   UUGAUUUUUU  AUU UUGGCCAAGAAUUU    A AA          CA   A              AUUU
Stem-loop sequence	AACUAAAAAAACUAAGAACCGGUUCUUAAAGUCCUUAUUUAUUUAAGAACCGGUUAUUAACUUUUUUAGUUAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_009108522.2	ncRNA:24   UUGGCCAAGAAUCAAAAAAAUCAA   1   |**=**||=||||||||||||||| targets:897   AUAUUUUUUUUAGUUUUUUUAGUU   920 Target Full Sequence	2.0	PREDICTED: Brassica rapa adenine phosphoribosyltransferase 2-like (LOC103832504), transcript variant X6, mRNA	adenine phosphoribosyltransferase 2-like(LOC103832504)	coding protein	psRNATarget
XM_009108521.2	ncRNA:24   UUGGCCAAGAAUCAAAAAAAUCAA   1   |**=**||=||||||||||||||| targets:863   AUAUUUUUUUUAGUUUUUUUAGUU   886 Target Full Sequence	2.0	PREDICTED: Brassica rapa adenine phosphoribosyltransferase 2-like (LOC103832504), transcript variant X2, mRNA	adenine phosphoribosyltransferase 2-like(LOC103832504)	coding protein	psRNATarget
XM_018653216.1	ncRNA:24   UUGGCCAAGAAUCAAAAAAAUCAA   1   |**=**||=||||||||||||||| targets:863   AUAUUUUUUUUAGUUUUUUUAGUU   886 Target Full Sequence	2.0	PREDICTED: Brassica rapa adenine phosphoribosyltransferase 2-like (LOC103832504), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_018653217.1	ncRNA:24   UUGGCCAAGAAUCAAAAAAAUCAA   1   |**=**||=||||||||||||||| targets:863   AUAUUUUUUUUAGUUUUUUUAGUU   886 Target Full Sequence	2.0	PREDICTED: Brassica rapa adenine phosphoribosyltransferase 2-like (LOC103832504), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_018653218.1	ncRNA:24   UUGGCCAAGAAUCAAAAAAAUCAA   1   |**=**||=||||||||||||||| targets:863   AUAUUUUUUUUAGUUUUUUUAGUU   886 Target Full Sequence	2.0	PREDICTED: Brassica rapa adenine phosphoribosyltransferase 2-like (LOC103832504), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_018653219.1	ncRNA:24   UUGGCCAAGAAUCAAAAAAAUCAA   1   |**=**||=||||||||||||||| targets:863   AUAUUUUUUUUAGUUUUUUUAGUU   886 Target Full Sequence	2.0	PREDICTED: Brassica rapa adenine phosphoribosyltransferase 2-like (LOC103832504), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_009131757.2	ncRNA:24   UUGGCCAAGAAUCAAAAAAAUCAA   1   ||||||||=||||*|||||||||| targets:522   AACCGGUUUUUAGCUUUUUUAGUU   545 Target Full Sequence	2.5	PREDICTED: Brassica rapa uncharacterized LOC103854791 (LOC103854791), mRNA	uncharacterized LOC103854791(LOC103854791)	coding protein	psRNATarget
XM_009151904.2	ncRNA:24   UUGGCCAAGAAUCAAAAAAAUCAA   1   |=*||*|||||||*|||||||||| targets:1290   AGACGUUUCUUAGAUUUUUUAGUU   1313 Target Full Sequence	2.5	PREDICTED: Brassica rapa UPF0160 protein (LOC103873492), mRNA	UPF0160 protein(LOC103873492)	coding protein	psRNATarget
XM_009118173.1	ncRNA:24   UUGGCCAAGAAUCAAAAAAAUCAA   1   *|||**||||*||||||||||||* targets:1590   CACCAUUUCUAAGUUUUUUUAGUC   1613 Target Full Sequence	3.0	PREDICTED: Brassica rapa regulatory protein NPR6 (LOC103841622), mRNA	regulatory protein NPR6(LOC103841622)	coding protein	psRNATarget
FJ532056.1	ncRNA:24   UUGGCCAAGAAUCAAAAAAAUCAA   1   *|||**||||*||||||||||||* targets:1378   CACCAUUUCUAAGUUUUUUUAGUC   1401 Target Full Sequence	3.0	Brassica rapa subsp. pekinensis NPR1 protein (NPR1) mRNA, complete cds	NA	coding protein	psRNATarget