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BaseInfo

ncRNA ID	novel_bra_miR302
Species	Brassica rapa
Class	miRNA
Genome position	ChrA8:14020384-14020549 [+]
Reference genome	Brapa_1.0
Source	SRR1592476
Length	21
Mature sequence(if miRNA)	146 - UGGAGUGAGGAUGGAGAUGCU - 166
Stem-loop(if miRNA)	--           C             A  UC     A AG  GG    A     U AAC             ---U  -     U   CAUCUUCAUCC CACUCCAUAAUUU CU  AAAAU G  UG  AAAU GAGUA G   AAAAAAUAAAAAA    UU CUCCA U   ||||||||||| ||||||||||||| ||  ||||| |  ||  |||| ||||| |   |||||||||||||    || |||||   GUAGAGGUAGG GUGAGGUAUUAAA GA  UUUUA C  AC  UUUA CUCAU C   UUUUUUGUUUUUU    AA GAGGU U UC           A             C  UA     C AG  UU    C     - -AA             CACU  U     A
Stem-loop sequence	CAUCUUCAUCCCCACUCCAUAAUUUACUUCAAAAUAGAGUGGGAAAUAGAGUAUGAACAAAAAAUAAAAAAUUUCUCCAUUUAUGGAGUAAUCACUUUUUUGUUUUUUAACUACUCCAUUUUUCAGACCAUUUUAUAGCAAAUUAUGGAGUGAGGAUGGAGAUGCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_018655293.1	ncRNA:21   UCGUAGAGGUAGGAGUGAGGU   1   ||||||||||||||||||||| targets:1953   AGCAUCUCCAUCCUCACUCCA   1973 Target Full Sequence	0.0	PREDICTED: Brassica rapa 2-hydroxy-6-oxononadienedioate/2-hydroxy-6-oxononatrienedioate hydrolase 1-like (LOC103845591), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_009132518.2	ncRNA:21   UCGUAGAGGUAGGAGUGAGGU   1   |*|||||||||||||||*||* targets:207   ACCAUCUCCAUCCUCACCCCC   227 Target Full Sequence	2.5	PREDICTED: Brassica rapa purine-uracil permease NCS1 (LOC103855523), mRNA	purine-uracil permease NCS1(LOC103855523)	coding protein	psRNATarget
XM_009141034.2	ncRNA:21   UCGUAGAGGUAGGAGUGAGGU   1   |*|||||||||||||*||||* targets:73   AUCAUCUCCAUCCUCUCUCCC   93 Target Full Sequence	2.5	PREDICTED: Brassica rapa RNA polymerase sigma factor sigC (LOC103863276), mRNA	RNA polymerase sigma factor sigC(LOC103863276)	coding protein	psRNATarget