ncRNA ID | novel_bra_miR296 |
Species | Brassica rapa |
Class | miRNA |
Genome position | ChrA7:20003276-20003365 [-] |
Reference genome | Brapa_1.0 |
Source | SRR1592476 |
Length | 20 |
Mature sequence(if miRNA) | 1 - UUGCAUAUCUUAGGAGCUUU - 20 |
Stem-loop(if miRNA) |
--    G     C    G UC     -    CU       AUAGAG   AGCU CUAAG UAUG A  CCAUA AGCC  AAUCCUU      A   |||| ||||| |||| |  ||||| ||||  |||||||   UCGA GAUUC AUAC U  GGUAU UUGG  UUAGGAA      G UU    G     U    G UC     A    -U       AAAAAA |
Stem-loop sequence | AGCUGCUAAGCUAUGGAUCCCAUAAGCCCUAAUCCUUAUAGAGAGAAAAAAAAGGAUUUGGUUAUAUGGCUUGCAUAUCUUAGGAGCUUU |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
XM_009110712.2 |
|
2.5 | PREDICTED: Brassica rapa 50S ribosomal protein L21, mitochondrial-like (LOC103834649), mRNA | 50S ribosomal protein L21, mitochondrial-like(LOC103834649) | coding protein | psRNATarget |