Search result

BaseInfo

ncRNA ID novel_bra_miR296
Species Brassica rapa
Class miRNA
Genome position ChrA7:20003276-20003365 [-]
Reference genome Brapa_1.0
Source SRR1592476
Length 20
Mature sequence(if miRNA) 1 - UUGCAUAUCUUAGGAGCUUU - 20
Stem-loop(if miRNA) --    G     C    G UC     -    CU       AUAGAG
  AGCU CUAAG UAUG A  CCAUA AGCC  AAUCCUU      A
  |||| ||||| |||| |  ||||| ||||  |||||||
  UCGA GAUUC AUAC U  GGUAU UUGG  UUAGGAA      G
UU    G     U    G UC     A    -U       AAAAAA
Stem-loop sequence AGCUGCUAAGCUAUGGAUCCCAUAAGCCCUAAUCCUUAUAGAGAGAAAAAAAAGGAUUUGGUUAUAUGGCUUGCAUAUCUUAGGAGCUUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_009110712.2
ncRNA:20   UUUCGAGGAUUCUAUACGUU   1
  *|=||||||||||||||*||
targets:973   UAGGCUCCUAAGAUAUGAAA   992

2.5 PREDICTED: Brassica rapa 50S ribosomal protein L21, mitochondrial-like (LOC103834649), mRNA 50S ribosomal protein L21, mitochondrial-like(LOC103834649) coding protein psRNATarget