Search result

BaseInfo

ncRNA ID novel_bra_miR290
Species Brassica rapa
Class miRNA
Genome position ChrA7:1885991-1886043 [-]
Reference genome Brapa_1.0
Source SRR1592476
Length 21
Mature sequence(if miRNA) 1 - AUCUGGACGGUUGUAGUCAGC - 21
Stem-loop(if miRNA) --G   GA UG    A   --      G
   GAC  A  GCUG UCU  GUUAGU U
   |||  |  |||| |||  |||||| A
   CUG  U  UGGC AGG  UAGUCA G
CGA   -A GU    -   UC      A
Stem-loop sequence GGACGAAUGGCUGAUCUGUUAGUGUAGAACUGAUCUGGACGGUUGUAGUCAGC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_009116480.1
ncRNA:21   CGACUGAUGUUGGCAGGUCUA   1
  |||||=|||||||||||||||
targets:629   GCUGAUUACAACCGUCCAGAU   649

1.0 PREDICTED: Brassica rapa uncharacterized LOC103839998 (LOC103839998), mRNA uncharacterized LOC103839998(LOC103839998) coding protein psRNATarget