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BaseInfo

ncRNA ID	novel_bra_miR280
Species	Brassica rapa
Class	miRNA
Genome position	ChrA5:14801973-14802100 [+]
Reference genome	Brapa_1.0
Source	SRR1592476
Length	22
Mature sequence(if miRNA)	1 - AAAGAGAAGAAAGAUACUGGAA - 22
Stem-loop(if miRNA)	--AAA         GA          A        AA  A       G    C  UA  A    A      GAGAAGAAA  UACUGGAAUA CAUGUGGG  GA ACAAGGC AGAC UA  UA GUCU G      |||||||||  |||||||||| ||||||||  || ||||||| |||| ||  || ||||      CUCUUCUUU  AUGACCUUGU GUACACCC  CU UGUUCCG UCUG AU  AU CAGA C UCUUC         -A          -        GC  C       A    A  GC  C    A
Stem-loop sequence	AAAGAGAAGAAAGAUACUGGAAUAACAUGUGGGAAGAAACAAGGCGAGACCUAUAUAAGUCUAGCAAGACCUACGUAAGUCUAGCCUUGUCUCCGCCCACAUGUGUUCCAGUAAUUUCUUCUCCUUCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_009121084.2	ncRNA:22   AAGGUCAUAGAAAGAAGAGAAA   1   *|=||*|||||||||||||||| targets:251   CUUCACUAUCUUUCUUCUCUUU   272 Target Full Sequence	1.0	PREDICTED: Brassica rapa subtilisin-like protease SBT1.2 (LOC103844288), mRNA	subtilisin-like protease SBT1.2(LOC103844288)	coding protein	psRNATarget
XM_009136495.2	ncRNA:22   AAGGUCAUAGAAAGAAGAGAAA   1   *|=|||**|||||||||||||| targets:2675   AUUCAGAUUCUUUCUUCUCUUU   2696 Target Full Sequence	2.0	PREDICTED: Brassica rapa uncharacterized LOC103859012 (LOC103859012), transcript variant X1, mRNA	uncharacterized LOC103859012(LOC103859012)	coding protein	psRNATarget
XM_009136496.2	ncRNA:22   AAGGUCAUAGAAAGAAGAGAAA   1   *|=|||**|||||||||||||| targets:2206   AUUCAGAUUCUUUCUUCUCUUU   2227 Target Full Sequence	2.0	PREDICTED: Brassica rapa uncharacterized LOC103859012 (LOC103859012), transcript variant X2, mRNA	uncharacterized LOC103859012(LOC103859012)	coding protein	psRNATarget
XM_009133140.2	ncRNA:22   AAGGUCAUAGAAAGAAGAGAAA   1   ||*|||*|||*||||||||||| targets:66   UUACAGCAUCAUUCUUCUCUUU   87 Target Full Sequence	2.5	PREDICTED: Brassica rapa uncharacterized LOC103856062 (LOC103856062), mRNA	uncharacterized LOC103856062(LOC103856062)	coding protein	psRNATarget
XM_018654782.1	ncRNA:22   AAGGUCAUAGAAAGAAGAGAAA   1   ||=|*|*||||||||||||||* targets:1630   UUUCUGCAUCUUUCUUCUCUUC   1651 Target Full Sequence	3.0	PREDICTED: Brassica rapa K(+) efflux antiporter 1, chloroplastic (LOC103843811), transcript variant X1, mRNA	NA	coding protein	psRNATarget