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BaseInfo

ncRNA ID	novel_bra_miR278
Species	Brassica rapa
Class	miRNA
Genome position	ChrA5:13813087-13813180 [+]
Reference genome	Brapa_1.0
Source	SRR1592476
Length	24
Mature sequence(if miRNA)	1 - AGAGAAGAAAGAUACUGGAAUCAC - 24
Stem-loop(if miRNA)	---AG       A          U    G     -A   --A  -A   C      AGAAGAA GAUACUGGAA CACA GUGGG  AGA   AC  AGG G      ||||||| |||||||||| |||| |||||  |||   ||  ||| A      UCUUCUU UUAUGACCUU GUGU CACCC  UCU   UG  UCC G CUUCA       -          -    A     GA   GAA  CA   A
Stem-loop sequence	AGAGAAGAAAGAUACUGGAAUCACAGGUGGGAAGAAACAAGGCGAGACCUACGUAAGUCUAGCCCACAUGUGUUCCAGUAUUUUCUUCUACUUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_009129811.2	ncRNA:24   CACUAAGGUCAUAGAAAGAAGAGA   1   *|||*||||||||||||*|||||* targets:1310   CUGAAUCCAGUAUCUUUGUUCUCA   1333 Target Full Sequence	2.5	PREDICTED: Brassica rapa uncharacterized LOC103852916 (LOC103852916), transcript variant X1, mRNA	uncharacterized LOC103852916(LOC103852916)	coding protein	psRNATarget
XM_009129820.2	ncRNA:24   CACUAAGGUCAUAGAAAGAAGAGA   1   *|||*||||||||||||*|||||* targets:1090   CUGAAUCCAGUAUCUUUGUUCUCA   1113 Target Full Sequence	2.5	PREDICTED: Brassica rapa uncharacterized LOC103852916 (LOC103852916), transcript variant X3, mRNA	uncharacterized LOC103852916(LOC103852916)	coding protein	psRNATarget
XM_018653489.1	ncRNA:24   CACUAAGGUCAUAGAAAGAAGAGA   1   *|||*||||||||||||*|||||* targets:1072   CUGAAUCCAGUAUCUUUGUUCUCA   1095 Target Full Sequence	2.5	PREDICTED: Brassica rapa uncharacterized LOC103852916 (LOC103852916), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_009153792.2	ncRNA:24   CACUAAGGUCAUAGAAAGAAGAGA   1   ****||===||||||||||||||| targets:112   AAUCUUUUGGUAUCUUUCUUCUCU   135 Target Full Sequence	3.0	PREDICTED: Brassica rapa LOB domain-containing protein 23 (LOC103875284), mRNA	LOB domain-containing protein 23(LOC103875284)	coding protein	psRNATarget