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BaseInfo

ncRNA ID	novel_bra_miR270
Species	Brassica rapa
Class	miRNA
Genome position	ChrA4:339157-339275 [-]
Reference genome	Brapa_1.0
Source	SRR1592476
Length	24
Mature sequence(if miRNA)	1 - AGAUAUGAAGUUGGGUUGGAGCAU - 24
Stem-loop(if miRNA)	--          U   C   U UC              --  GAAGAACAAACAAAAAAU   GCUCCAAUCC ACU CAU U  CACUCUAUAAUGGA  GU                  A   |||||||||| ||| ||| |  ||||||||||||||  ||                  A   CGAGGUUGGG UGA GUA A  GUGAGGUAUUACUU  AA                  A UA          U   A   U GA              UA  UGAGGUAUUUACCUCAUU
Stem-loop sequence	GCUCCAAUCCUACUCCAUUUUCCACUCUAUAAUGGAGUGAAGAACAAACAAAAAAUAAAUUACUCCAUUUAUGGAGUAAAUUUCAUUAUGGAGUGAGAUAUGAAGUUGGGUUGGAGCAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_009117052.2	ncRNA:24   UAC--GAGGUUGGGUUGAAGUAUAGA   1   |||--|||||*|||||||||||*||| targets:1179   AUGAACUCCAUCCCAACUUCAUCUCU   1204 Target Full Sequence	2.5	PREDICTED: Brassica rapa tubby-like F-box protein 10 (LOC103840554), mRNA	tubby-like F-box protein 10(LOC103840554)	coding protein	psRNATarget
XM_009111623.2	ncRNA:24   UAC--GAGGUUGGGUUGAAGUAUAGA   1   |||--|||||*|||||||||||*||| targets:1228   AUGAACUCCAUCCCAACUUCAUCUCU   1253 Target Full Sequence	2.5	PREDICTED: Brassica rapa tubby-like F-box protein 10 (LOC103835445), transcript variant X3, mRNA	tubby-like F-box protein 10(LOC103835445)	coding protein	psRNATarget
XM_018653829.1	ncRNA:24   UAC--GAGGUUGGGUUGAAGUAUAGA   1   |||--|||||*|||||||||||*||| targets:1282   AUGAACUCCAUCCCAACUUCAUCUCU   1307 Target Full Sequence	2.5	PREDICTED: Brassica rapa tubby-like F-box protein 10 (LOC103835445), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_009111622.2	ncRNA:24   UAC--GAGGUUGGGUUGAAGUAUAGA   1   |||--|||||*|||||||||||*||| targets:1283   AUGAACUCCAUCCCAACUUCAUCUCU   1308 Target Full Sequence	2.5	PREDICTED: Brassica rapa tubby-like F-box protein 10 (LOC103835445), transcript variant X2, mRNA	tubby-like F-box protein 10(LOC103835445)	coding protein	psRNATarget
XM_009104811.2	ncRNA:24   UAC--GAGGUUGGGUUGAAGUAUAGA   1   |||--|||||*|||||||||||*||| targets:1311   AUGAACUCCAUCCCAACUUCAUCUCU   1336 Target Full Sequence	2.5	PREDICTED: Brassica rapa tubby-like F-box protein 10 (LOC103829145), mRNA	tubby-like F-box protein 10(LOC103829145)	coding protein	psRNATarget