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BaseInfo

ncRNA ID	novel_bra_miR253
Species	Brassica rapa
Class	miRNA
Genome position	ChrA2:27730257-27730411 [+]
Reference genome	Brapa_1.0
Source	SRR1592475;SRR1776877
Length	24
Mature sequence(if miRNA)	132 - AGUAAAUUAUGGAGUGGGGAUGGA - 155
Stem-loop(if miRNA)	--                      C     AUA                 -----U          UAAAAAAUCU     U   CAUCCCCACUUCAUAAUUUACU CGAAA   GAGUGGAAAAUGGAGUA      AAACAAAAAA          CUCCA U   |||||||||||||||||||||| |||||   |||||||||||||||||      ||||||||||          |||||   GUAGGGGUGAGGUAUUAAAUGA GUUUU   UUCACCUUUUAUCUUAU      UUUGUUUUUU          GAGGU U AG                      C     -AC                 CACUUC          ---CACUAAU     A
Stem-loop sequence	CAUCCCCACUUCAUAAUUUACUCCGAAAAUAGAGUGGAAAAUGGAGUAUAAACAAAAAAUAAAAAAUCUCUCCAUUUAUGGAGUAAUCACUUUUUUGUUUCUUCACUAUUCUAUUUUCCACUUCAUUUUGCAGUAAAUUAUGGAGUGGGGAUGGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_018655293.1	ncRNA:24   AGGUAGGGGUGAGGUAUUAAAUGA   1   |||||||=|||||||||||||||| targets:1959   UCCAUCCUCACUCCAUAAUUUACU   1982 Target Full Sequence	1.0	PREDICTED: Brassica rapa 2-hydroxy-6-oxononadienedioate/2-hydroxy-6-oxononatrienedioate hydrolase 1-like (LOC103845591), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_009137393.2	ncRNA:24   AGGUAGGGGUGAGGUAUUAAAUGA   1   |||||==||||||||||||||||| targets:1099   UCCAUUUCCACUCCAUAAUUUACU   1122 Target Full Sequence	2.0	PREDICTED: Brassica rapa zinc finger protein AZF2-like (LOC103859816), mRNA	zinc finger protein AZF2-like(LOC103859816)	coding protein	psRNATarget
XM_018653025.1	ncRNA:24   AGGUAGGGGUGAGGUAUUAAAUGA   1   ||||*|||*||||||||*|||||| targets:326   UCCAACCCAACUCCAUAUUUUACU   349 Target Full Sequence	2.5	PREDICTED: Brassica rapa uncharacterized LOC108869048 (LOC108869048), mRNA	NA	coding protein	psRNATarget