ncRNA ID | novel_bra_miR247 |
Species | Brassica rapa |
Class | miRNA |
Genome position | ChrA1:22362103-22362215 [-] |
Reference genome | Brapa_1.0 |
Source | SRR1592475 |
Length | 24 |
Mature sequence(if miRNA) | 90 - AAGUUGUGGAUUAGUUUUGGCAAA - 113 |
Stem-loop(if miRNA) |
--AA          A   -    - -    UC  - UAUAUUUUA   - UAAAUAUGUAAA     GUUGUGGAUU GUU UUGG C AAAU  UC C         UUA C            U     |||||||||| ||| |||| | ||||  || |         ||| |     CGAUAUCUAA CAG AGCC G UUUG  AG G         CUG U            G AGUG          A   C    A A    UU  U ------CCG   A UUAUAGAAGACA |
Stem-loop sequence | AAGUUGUGGAUUAGUUUUGGCAAAUUCUCCUAUAUUUUAUUACUAAAUAUGUAAAUGACAGAAGAUAUUUAGUCGCCGUGAUUGUUUAGACCGACGACAAAUCUAUAGCGUGA |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
XM_009146077.2 |
|
1.5 | PREDICTED: Brassica rapa UDP-glycosyltransferase 87A2 (LOC103867978), mRNA | UDP-glycosyltransferase 87A2(LOC103867978) | coding protein | psRNATarget |