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BaseInfo

ncRNA ID novel_bra_miR247
Species Brassica rapa
Class miRNA
Genome position ChrA1:22362103-22362215 [-]
Reference genome Brapa_1.0
Source SRR1592475
Length 24
Mature sequence(if miRNA) 90 - AAGUUGUGGAUUAGUUUUGGCAAA - 113
Stem-loop(if miRNA) --AA          A   -    - -    UC  - UAUAUUUUA   - UAAAUAUGUAAA
    GUUGUGGAUU GUU UUGG C AAAU  UC C         UUA C            U
    |||||||||| ||| |||| | ||||  || |         ||| |
    CGAUAUCUAA CAG AGCC G UUUG  AG G         CUG U            G
AGUG          A   C    A A    UU  U ------CCG   A UUAUAGAAGACA
Stem-loop sequence AAGUUGUGGAUUAGUUUUGGCAAAUUCUCCUAUAUUUUAUUACUAAAUAUGUAAAUGACAGAAGAUAUUUAGUCGCCGUGAUUGUUUAGACCGACGACAAAUCUAUAGCGUGA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_009146077.2
ncRNA:24   AAACGGUUUUGAUUAGGUGUUGAA   1
  ||||||||||||||*|||||||||
targets:1470   UUUGCCAAAACUAACCCACAACUU   1493

1.5 PREDICTED: Brassica rapa UDP-glycosyltransferase 87A2 (LOC103867978), mRNA UDP-glycosyltransferase 87A2(LOC103867978) coding protein psRNATarget