| ncRNA ID | novel_bra_miR246 |
| Species | Brassica rapa |
| Class | miRNA |
| Genome position | ChrA1:24583774-24583922 [+] |
| Reference genome | Brapa_1.0 |
| Source | SRR1592475;SRR1776899 |
| Length | 21 |
| Mature sequence(if miRNA) | 1 - UGAAGGAAUAGAGAGUGGAAU - 21 |
| Stem-loop(if miRNA) |
-- A U A UUUAUAU - C UUCAUGAACCAUUGUUUU UG AGGAAUAGAGAGUGGAAU GAGCCAAGG UGACUUGCCGG AC AAU GG G || |||||||||||||||||| ||||||||| ||||||||||| || ||| || AC UCUUUAUCUCUUGCUUUG CUCGGUUCC GUUGAACGGUC UG GUU GG G GU C U A ------- U - UUUCCCGACUCAUACACU |
| Stem-loop sequence | UGAAGGAAUAGAGAGUGGAAUUGAGCCAAGGAUGACUUGCCGGUUUAUAUACAAUCGGUUCAUGAACCAUUGUUUUGGUCACAUACUCAGCCCUUUGGUUGUGUCUGGCAAGUUGACCUUGGCUCUGUUUCGUUCUCUAUUUCUCCAUG |
| Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| XM_018659404.1 |
|
2.5 | PREDICTED: Brassica rapa uncharacterized LOC103851449 (LOC103851449), transcript variant X1, mRNA | NA | coding protein | psRNATarget | |||||||||
| XM_009117868.2 |
|
2.5 | PREDICTED: Brassica rapa TATA-binding protein-associated factor BTAF1 (LOC103841344), mRNA | TATA-binding protein-associated factor BTAF1(LOC103841344) | coding protein | psRNATarget |