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BaseInfo

ncRNA ID novel_bra_miR238
Species Brassica rapa
Class miRNA
Genome position ChrA9:24453796-24454004 [-]
Reference genome Brapa_1.0
Source SRR1592475;SRR1592478
Length 24
Mature sequence(if miRNA) 1 - AAGCUACCUGGAAGAUAUCAAGCU - 24
Stem-loop(if miRNA) --       G   A UG  -   -ACG      AA  G   C    UCACC    CAUUCGGAGAUGGAGGCAUUAAUUUGGGCAAUGGAAUGUAUGCGAAAUUUAAG
  UUUGAUA CUU U  GG GGC    AAAUGU  GG CAU CCUC     UCUU                                                     G
  ||||||| ||| |  || |||    ||||||  || ||| ||||     ||||                                                     C
  GAACUAU GAA G  CC UCG    UUUACG  CC GUA GGAG     CCAA                                                     A
UC       A   - GU  A   AAAG      -A  G   A    ----A    GGCUUUGGUAGAAGUGGUCAACUCUUGUUAGGCAACGUUUGCAUUGGACUUUG
Stem-loop sequence UUUGAUAGCUUAUUGGGGGCACGAAAUGUAAGGGCAUCCCUCUCACCUCUUCAUUCGGAGAUGGAGGCAUUAAUUUGGGCAAUGGAAUGUAUGCGAAAUUUAAGGCAGUUUCAGGUUACGUUUGCAACGGAUUGUUCUCAACUGGUGAAGAUGGUUUCGGAACCAGAGGAAUGGCCAGCAUUUGAAAGCUACCUGGAAGAUAUCAAGCU