ncRNA ID | novel_bra_miR238 |
Species | Brassica rapa |
Class | miRNA |
Genome position | ChrA9:24453796-24454004 [-] |
Reference genome | Brapa_1.0 |
Source | SRR1592475;SRR1592478 |
Length | 24 |
Mature sequence(if miRNA) | 1 - AAGCUACCUGGAAGAUAUCAAGCU - 24 |
Stem-loop(if miRNA) |
--       G   A UG  -   -ACG      AA  G   C    UCACC    CAUUCGGAGAUGGAGGCAUUAAUUUGGGCAAUGGAAUGUAUGCGAAAUUUAAG   UUUGAUA CUU U  GG GGC    AAAUGU  GG CAU CCUC     UCUU                                                     G   ||||||| ||| |  || |||    ||||||  || ||| ||||     ||||                                                     C   GAACUAU GAA G  CC UCG    UUUACG  CC GUA GGAG     CCAA                                                     A UC       A   - GU  A   AAAG      -A  G   A    ----A    GGCUUUGGUAGAAGUGGUCAACUCUUGUUAGGCAACGUUUGCAUUGGACUUUG |
Stem-loop sequence | UUUGAUAGCUUAUUGGGGGCACGAAAUGUAAGGGCAUCCCUCUCACCUCUUCAUUCGGAGAUGGAGGCAUUAAUUUGGGCAAUGGAAUGUAUGCGAAAUUUAAGGCAGUUUCAGGUUACGUUUGCAACGGAUUGUUCUCAACUGGUGAAGAUGGUUUCGGAACCAGAGGAAUGGCCAGCAUUUGAAAGCUACCUGGAAGAUAUCAAGCU |