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BaseInfo

ncRNA ID	ath-miR5652
Species	Arabidopsis thaliana
Class	miRNA
Genome position	chr1:23412989-23413436 [-]
Reference genome	TAIR10
Source	miRBase
Length	21
Mature sequence(if miRNA)	414 - UUGAAUGUGAAUGAAUCGGGC - 434
Stem-loop(if miRNA)	---C    A   G  UGUU      GA      C       -UAUCCCAUUUCCACCA   GACCAACAAGAGAUACGGCAUCUGAAAUCCUAUUCCCGUGACAGAAACCAUUGAGCAGAGAGUUAAGCGUGACAAUAUCGGGCUCAUAGCCGAGUUUCAUCAUCUUGGCAAGAACAGCUAAAGCAAGAGAGAGCUGAGAGCGUCGGCAGAAACAGUUGAUGAGAAU     AUGA UUA AG    GAAUGU  AUGAAU GGGCUGA                 UCU                                                                                                                                                                      A     |||| ||| ||    ||||||  |||||| |||||||                 |||     UACU AAU UC    UUUAUA  UAUUUA UCCGAUU                 CUA                                                                                                                                                                      C UCUA    -   G  --UU      GC      -       UACUAAACUUCGAUCUA   CGCCAAUUAGACAAGCCACUGUACCAGUUCAGAGCAGGAAAGGGAAGCUAACAACUCAAGUCAUUUGACAACUCACGGUAACGAUUCUACUUGUUCAAGCUAGAACAGUAGAGAGAGCCGCUCGUCUACGUUUUAAACCCUUAAAGUGUAUUAGAAAUGUGUAUGU
Stem-loop sequence	CAUGAAUUAGAGUGUUGAAUGUGAAUGAAUCGGGCUGAUAUCCCAUUUCCACCAUCUGACCAACAAGAGAUACGGCAUCUGAAAUCCUAUUCCCGUGACAGAAACCAUUGAGCAGAGAGUUAAGCGUGACAAUAUCGGGCUCAUAGCCGAGUUUCAUCAUCUUGGCAAGAACAGCUAAAGCAAGAGAGAGCUGAGAGCGUCGGCAGAAACAGUUGAUGAGAAUACUGUAUGUGUAAAGAUUAUGUGAAAUUCCCAAAUUUUGCAUCUGCUCGCCGAGAGAGAUGACAAGAUCGAACUUGUUCAUCUUAGCAAUGGCACUCAACAGUUUACUGAACUCAACAAUCGAAGGGAAAGGACGAGACUUGACCAUGUCACCGAACAGAUUAACCGCAUCAUCUAGCUUCAAAUCAUUUAGCCUAUUUAUCGAUAUUUUUCUGUAAUCAUAUCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT000125.1	ncRNA:21   CGGGCUAAGUAAGUGUAAGUU   1   ||||||||||||||||||||| targets:549   GCCCGAUUCAUUCACAUUCAA   569 Target Full Sequence	0.0	Arabidopsis thaliana unknown protein (At1g63130) mRNA, complete cds	NA	coding protein	psRNATarget
AY128387.1	ncRNA:21   CGGGCUAAGUAAGUGUAAGUU   1   ||||||||||||||||||||| targets:673   GCCCGAUUCAUUCACAUUCAA   693 Target Full Sequence	0.0	Arabidopsis thaliana unknown protein (At1g63130) mRNA, complete cds	NA	coding protein	psRNATarget
NM_001334067.1	ncRNA:21   CGGGCUAAGUAAGUGUAAGUU   1   ||||||||||||||||||||| targets:885   GCCCGAUUCAUUCACAUUCAA   905 Target Full Sequence	0.0	Arabidopsis thaliana Tetratricopeptide repeat (TPR)-like superfamily protein mRNA	Tetratricopeptide repeat (TPR)-like superfamily protein(AT1G63130)	coding protein	psRNATarget
NM_104991.3	ncRNA:21   CGGGCUAAGUAAGUGUAAGUU   1   ||||||||||||||||||||| targets:885   GCCCGAUUCAUUCACAUUCAA   905 Target Full Sequence	0.0	Arabidopsis thaliana Tetratricopeptide repeat (TPR)-like superfamily protein mRNA	Tetratricopeptide repeat (TPR)-like superfamily protein(AT1G63130)	coding protein	psRNATarget
BX821915.1	ncRNA:21   CGGGCUAAGUAAGUGUAAGUU   1   *|=|||||*|||||||||||| targets:704   CCUCGAUUGAUUCACAUUCAA   724 Target Full Sequence	2.5	Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL84ZD03 of Silique of strain col-0 of Arabidopsis thaliana (thale cress)	NA	coding protein	psRNATarget
BT004973.1	ncRNA:21   CGGGCUAAGUAAGUGUAAGUU   1   |*||*|||||*|||||||||| targets:684   GACCAAUUCAGUCACAUUCAA   704 Target Full Sequence	2.5	Arabidopsis thaliana clone U50495 unknown protein (At2g38300) mRNA, complete cds	NA	coding protein	psRNATarget

Reference

1	PMID:21940835 "High-resolution experimental and computational profiling of tissue-specific known and novel miRNAs in Arabidopsis"; Breakfield NW, Corcoran DL, Petricka JJ, Shen J, Sae-Seaw J, Rubio-Somoza I, Weigel D, Ohler U, Benfey PN; Genome Res. 22:163-176(2012).