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BaseInfo

ncRNA ID novel_bra_miR222
Species Brassica rapa
Class miRNA
Genome position ChrA6:25637809-25637905 [-]
Reference genome Brapa_1.0
Source SRR1161445
Length 21
Mature sequence(if miRNA) 77 - UGGAUGAUGCUUGGCUCGAGA - 97
Stem-loop(if miRNA) --U      U      CU   -G C     --AA   G     UG G  G
   GGAUGA GCUUGG  CGA  A CAUUA    UAU AUCAU  U AU U
   |||||| ||||||  |||  | |||||    ||| |||||  | ||
   CUUACU CGGACC  GCU  U GUAAU    AUA UAGUA  A UA U
CCC      U      AG   GA A     AGUA   G     GU G  G
Stem-loop sequence UGGAUGAUGCUUGGCUCGAGACCAUUAAAUAUGAUCAUUGUGAUGUUGAUGAUGAUGAUGAUAAUGAUAAUGAUAGUCGGACCAGGCUUCAUUCCCC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_009149103.2
ncRNA:21   AGAGCUCGGUUCGUAGUAGGU   1
  *|||||||||||||||*||||
targets:594   CCUCGAGCCAAGCAUCUUCCA   614

1.5 PREDICTED: Brassica rapa S-adenosylmethionine decarboxylase proenzyme 3-like (LOC103870913), mRNA S-adenosylmethionine decarboxylase proenzyme 3-like(LOC103870913) coding protein psRNATarget