ncRNA ID | novel_bra_miR222 |
Species | Brassica rapa |
Class | miRNA |
Genome position | ChrA6:25637809-25637905 [-] |
Reference genome | Brapa_1.0 |
Source | SRR1161445 |
Length | 21 |
Mature sequence(if miRNA) | 77 - UGGAUGAUGCUUGGCUCGAGA - 97 |
Stem-loop(if miRNA) |
--U      U      CU   -G C     --AA   G     UG G  G    GGAUGA GCUUGG  CGA  A CAUUA    UAU AUCAU  U AU U    |||||| ||||||  |||  | |||||    ||| |||||  | ||    CUUACU CGGACC  GCU  U GUAAU    AUA UAGUA  A UA U CCC      U      AG   GA A     AGUA   G     GU G  G |
Stem-loop sequence | UGGAUGAUGCUUGGCUCGAGACCAUUAAAUAUGAUCAUUGUGAUGUUGAUGAUGAUGAUGAUAAUGAUAAUGAUAGUCGGACCAGGCUUCAUUCCCC |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
XM_009149103.2 |
|
1.5 | PREDICTED: Brassica rapa S-adenosylmethionine decarboxylase proenzyme 3-like (LOC103870913), mRNA | S-adenosylmethionine decarboxylase proenzyme 3-like(LOC103870913) | coding protein | psRNATarget |