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BaseInfo

ncRNA ID	novel_bra_miR218
Species	Brassica rapa
Class	miRNA
Genome position	ChrA7:7670000-7670066 [-]
Reference genome	Brapa_1.0
Source	SRR1592475
Length	21
Mature sequence(if miRNA)	1 - CUGAAGUGUUUGGAGGAACUC - 21
Stem-loop(if miRNA)	--                  C       CCUGU   GUUCCUUCGAACACUUCA UGAAAAA     C   |||||||||||||||||| |||||||     A   CAAGGAGGUUUGUGAAGU AUUUUUU     A CU                  C       UUAAU
Stem-loop sequence	GUUCCUUCGAACACUUCACUGAAAAACCUGUCAAUAAUUUUUUUUACUGAAGUGUUUGGAGGAACUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_009103518.1	ncRNA:21   CUCAAGGAGGUUUGUGAAGUC   1   ||||||||||||||||||||* targets:399   GAGUUCCUCCAAACACUUCAU   419 Target Full Sequence	1.0	PREDICTED: Brassica rapa ATP sulfurylase 4, chloroplastic (LOC103827954), mRNA	ATP sulfurylase 4, chloroplastic(LOC103827954)	coding protein	psRNATarget
XM_009142693.2	ncRNA:21   CUCAAGGAGGUUUGUGAAGUC   1   ||||*|||||||||||||||| targets:1096   GAGUGCCUCCAAACACUUCAG   1116 Target Full Sequence	1.0	PREDICTED: Brassica rapa uncharacterized LOC103864919 (LOC103864919), mRNA	uncharacterized LOC103864919(LOC103864919)	coding protein	psRNATarget
XM_009137585.2	ncRNA:21   CUCAAGGAGGUUUGUGAAGUC   1   ||||||||||||||*|||||* targets:385   GAGUUCCUCCAAACUCUUCAU   405 Target Full Sequence	2.5	PREDICTED: Brassica rapa ATP sulfurylase 1, chloroplastic (LOC103859979), mRNA	ATP sulfurylase 1, chloroplastic(LOC103859979)	coding protein	psRNATarget
XM_009147003.2	ncRNA:21   CUCAAGGAGGUUUGUGAAGUC   1   ||||||||||||||*|||||* targets:404   GAGUUCCUCCAAACUCUUCAU   424 Target Full Sequence	2.5	PREDICTED: Brassica rapa ATP sulfurylase 1, chloroplastic-like (LOC103868958), mRNA	ATP sulfurylase 1, chloroplastic-like(LOC103868958)	coding protein	psRNATarget
XM_009129239.1	ncRNA:21   CUCAAGGAGGUUUGUGAAGUC   1   *=|*|||||||||||||||*| targets:1003   CGGCUCCUCCAAACACUUCUG   1023 Target Full Sequence	2.5	PREDICTED: Brassica rapa uncharacterized LOC103852327 (LOC103852327), mRNA	uncharacterized LOC103852327(LOC103852327)	coding protein	psRNATarget
XM_009123832.2	ncRNA:21   CUCAAGGAGGUUUGUGAAGUC   1   *|||||=*||||||||||||* targets:139   AAGUUCUCCCAAACACUUCAA   159 Target Full Sequence	3.0	PREDICTED: Brassica rapa sulfate transporter 2.1-like (LOC103846830), transcript variant X2, mRNA	sulfate transporter 2.1-like(LOC103846830)	coding protein	psRNATarget
XM_009127072.2	ncRNA:21   CUCAAGGAGGUUUGUGAAGUC   1   *|||||=*||||||||||||* targets:124   AAGUUCUCCCAAACACUUCAA   144 Target Full Sequence	3.0	PREDICTED: Brassica rapa sulfate transporter 2.1 (LOC103850335), mRNA	sulfate transporter 2.1(LOC103850335)	coding protein	psRNATarget
XM_009123831.2	ncRNA:21   CUCAAGGAGGUUUGUGAAGUC   1   *|||||=*||||||||||||* targets:139   AAGUUCUCCCAAACACUUCAA   159 Target Full Sequence	3.0	PREDICTED: Brassica rapa sulfate transporter 2.1-like (LOC103846830), transcript variant X1, mRNA	sulfate transporter 2.1-like(LOC103846830)	coding protein	psRNATarget