Search result

BaseInfo

ncRNA ID novel_bra_miR216
Species Brassica rapa
Class miRNA
Genome position ChrA7:8481640-8481752 [-]
Reference genome Brapa_1.0
Source SRR1592475;SRR1776877;SRR1776899;SRR1777714
Length 24
Mature sequence(if miRNA) 1 - AUGUAGCGACCGAGCGGGACGAUC - 24
Stem-loop(if miRNA) --                                CUC  GCCAAA  C        A
  UCGUCCCGCUCGGUCGCUACGUAGCGACCGAG   GA      GC CGGUUGCU C
  ||||||||||||||||||||||||||||||||   ||      || ||||||||
  AGCAGGGCGAGCCAGCGAUGUAUCGCUGGCUC   CU      CG GCCAACGA G
CU                                ACC  -AACUG  A        U
Stem-loop sequence UCGUCCCGCUCGGUCGCUACGUAGCGACCGAGCUCGAGCCAAAGCCCGGUUGCUACGUAGCAACCGAGCGUCAAUCCCACUCGGUCGCUAUGUAGCGACCGAGCGGGACGAUC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_009126102.1
ncRNA:24   CUAGCAGGGCGAGCCAGCGAUGUA   1
  |=|||||||||||||||||||=||
targets:536   GGUCGUCCCGCUCGGUCGCUAUAU   559

1.5 PREDICTED: Brassica rapa uncharacterized LOC103849316 (LOC103849316), mRNA uncharacterized LOC103849316(LOC103849316) coding protein psRNATarget