Search result

BaseInfo

ncRNA ID novel_bra_miR213
Species Brassica rapa
Class miRNA
Genome position ChrA7:241521-241580 [+]
Reference genome Brapa_1.0
Source SRR1592475;SRR1592477;SRR1776889;SRR1777714;SRR1485281
Length 24
Mature sequence(if miRNA) 1 - AAAUAUUGUUGAAACAGGAGGGCA - 24
Stem-loop(if miRNA) --A                G     ACUUC
   AAUAUUGUUGAAACAG AGGGC     A
   |||||||||||||||| |||||     A
   UUAUGAUAAUUUUGUC UUCUG     A
UAG                -     AUAAA
Stem-loop sequence AAAUAUUGUUGAAACAGGAGGGCACUUCAAAAAAUAGUCUUCUGUUUUAAUAGUAUUGAU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_009142901.1
ncRNA:24   ACGGGAGGACAAAGUUGUUAUAAA   1
  |||=-|||||*||||||||*||||
targets:172   UGCU-UCCUGGUUCAACAACAUUU   194

2.5 PREDICTED: Brassica rapa uncharacterized LOC103865123 (LOC103865123), mRNA uncharacterized LOC103865123(LOC103865123) coding protein psRNATarget