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BaseInfo

ncRNA ID novel_bra_miR210
Species Brassica rapa
Class miRNA
Genome position ChrA1:15318405-15318486 [+]
Reference genome Brapa_1.0
Source SRR1592475;SRR1592476
Length 24
Mature sequence(if miRNA) 59 - AUCAAGUUGUAGGUUAGUUUUGGC - 82
Stem-loop(if miRNA) --       U         UUU   UUUGAUUCAAGUUUGAG
  UAGAAUU ACCUACAAC   GCA                 U
  ||||||| |||||||||   |||
  GUUUUGA UGGAUGUUG   ACU                 A
CG       U         --A   AAAAUUGGAGUUUGUAU
Stem-loop sequence UAGAAUUUACCUACAACUUUGCAUUUGAUUCAAGUUUGAGUAUAUGUUUGAGGUUAAAAUCAAGUUGUAGGUUAGUUUUGGC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_009146077.2
ncRNA:24   CGGUUUUGAUUGGAUGUUGAACUA   1
  |||||||||||||*||||||||||
targets:1473   GCCAAAACUAACCCACAACUUGAU   1496

1.5 PREDICTED: Brassica rapa UDP-glycosyltransferase 87A2 (LOC103867978), mRNA UDP-glycosyltransferase 87A2(LOC103867978) coding protein psRNATarget