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BaseInfo

ncRNA ID novel_bra_miR206
Species Brassica rapa
Class miRNA
Genome position ChrA7:904286-904373 [+]
Reference genome Brapa_1.0
Source SRR1592475;SRR1161445;SRR1592476;SRR1592477;SRR1592478;SRR1776796;SRR1776877;SRR1776880;SRR1776899;SRR1777714;SRR2912891;SRR1160826
Length 20
Mature sequence(if miRNA) 1 - CGACAGAAGAGAGUGAGCAC - 20
Stem-loop(if miRNA) --C    -      A        A  U    CCCUUUU    A    G
   GACA GAAGAG GUGAGCAC CA GGCU       UUCU GCAU C
   |||| |||||| |||||||| || ||||       |||| ||||
   CUGU CUUCUC CACUCGUG GU UCGA       AAGA CGUA U
CCU    U      C        C  C    -------    A    C
Stem-loop sequence CGACAGAAGAGAGUGAGCACACAUGGCUCCCUUUUUUCUAGCAUGCUCAUGCAAGAAAGCUCUGCGUGCUCACCCUCUUCUUGUCUCC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_009104735.2
ncRNA:20   CACGAGUGAGAGAAGACAGC   1
  ||||||*||||||||||||*
targets:1932   GUGCUCUCUCUCUUCUGUCA   1951

2.0 PREDICTED: Brassica rapa squamosa promoter-binding-like protein 10 (LOC103829068), transcript variant X1, mRNA squamosa promoter-binding-like protein 10(LOC103829068) coding protein psRNATarget
XM_009104737.2
ncRNA:20   CACGAGUGAGAGAAGACAGC   1
  ||||||*||||||||||||*
targets:1926   GUGCUCUCUCUCUUCUGUCA   1945

2.0 PREDICTED: Brassica rapa squamosa promoter-binding-like protein 10 (LOC103829068), transcript variant X3, mRNA squamosa promoter-binding-like protein 10(LOC103829068) coding protein psRNATarget
XM_018653833.1
ncRNA:20   CACGAGUGAGAGAAGACAGC   1
  ||||||*||||||||||||*
targets:1770   GUGCUCUCUCUCUUCUGUCA   1789

2.0 PREDICTED: Brassica rapa squamosa promoter-binding-like protein 10 (LOC103835406), transcript variant X1, mRNA NA coding protein psRNATarget
XM_018653131.1
ncRNA:20   CACGAGUGAGAGAAGACAGC   1
  ||||||*||||||||||||*
targets:1739   GUGCUCUCUCUCUUCUGUCA   1758

2.0 PREDICTED: Brassica rapa squamosa promoter-binding-like protein 11 (LOC103829069), transcript variant X2, mRNA NA coding protein psRNATarget
XM_018659841.1
ncRNA:20   CACGAGUGAGAGAAGACAGC   1
  ||||||*||||||||||||*
targets:1557   GUGCUCUCUCUCUUCUGUCA   1576

2.0 PREDICTED: Brassica rapa squamosa promoter-binding-like protein 2 (LOC103827978), transcript variant X1, mRNA NA coding protein psRNATarget
XM_009144564.2
ncRNA:20   CACGAGUGAGAGAAGACAGC   1
  ||||||*||||||||||||*
targets:1154   GUGCUCUCUCUCUUCUGUCA   1173

2.0 PREDICTED: Brassica rapa squamosa promoter-binding-like protein 9 (LOC103866616), mRNA squamosa promoter-binding-like protein 9(LOC103866616) coding protein psRNATarget
XM_009103544.2
ncRNA:20   CACGAGUGAGAGAAGACAGC   1
  ||||||*||||||||||||*
targets:1212   GUGCUCUCUCUCUUCUGUCA   1231

2.0 PREDICTED: Brassica rapa squamosa promoter-binding-like protein 2 (LOC103827978), transcript variant X2, mRNA squamosa promoter-binding-like protein 2(LOC103827978) coding protein psRNATarget
XM_009103545.2
ncRNA:20   CACGAGUGAGAGAAGACAGC   1
  ||||||*||||||||||||*
targets:1173   GUGCUCUCUCUCUUCUGUCA   1192

2.0 PREDICTED: Brassica rapa squamosa promoter-binding-like protein 2 (LOC103827978), transcript variant X3, mRNA squamosa promoter-binding-like protein 2(LOC103827978) coding protein psRNATarget
XM_009115758.2
ncRNA:20   CACGAGUGAGAGAAGACAGC   1
  ||||||*||||||||||||*
targets:1236   GUGCUCUCUCUCUUCUGUCA   1255

2.0 PREDICTED: Brassica rapa squamosa promoter-binding-like protein 2 (LOC103839253), transcript variant X1, mRNA squamosa promoter-binding-like protein 2(LOC103839253) coding protein psRNATarget
XM_018654907.1
ncRNA:20   CACGAGUGAGAGAAGACAGC   1
  ||||||*||||||||||||*
targets:1235   GUGCUCUCUCUCUUCUGUCA   1254

2.0 PREDICTED: Brassica rapa squamosa promoter-binding-like protein 2 (LOC103839253), transcript variant X3, mRNA NA coding protein psRNATarget
XM_018659842.1
ncRNA:20   CACGAGUGAGAGAAGACAGC   1
  ||||||*||||||||||||*
targets:1130   GUGCUCUCUCUCUUCUGUCA   1149

2.0 PREDICTED: Brassica rapa squamosa promoter-binding-like protein 2 (LOC103827978), transcript variant X4, mRNA NA coding protein psRNATarget
XM_009104736.2
ncRNA:20   CACGAGUGAGAGAAGACAGC   1
  ||||||*||||||||||||*
targets:1243   GUGCUCUCUCUCUUCUGUCA   1262

2.0 PREDICTED: Brassica rapa squamosa promoter-binding-like protein 10 (LOC103829068), transcript variant X2, mRNA squamosa promoter-binding-like protein 10(LOC103829068) coding protein psRNATarget
XM_009143798.2
ncRNA:20   CACGAGUGAGAGAAGACAGC   1
  ||||||*||||||||||||*
targets:1077   GUGCUCUCUCUCUUCUGUCA   1096

2.0 PREDICTED: Brassica rapa squamosa promoter-binding-like protein 9 (LOC103865930), mRNA squamosa promoter-binding-like protein 9(LOC103865930) coding protein psRNATarget
XM_009104738.2
ncRNA:20   CACGAGUGAGAGAAGACAGC   1
  ||||||*||||||||||||*
targets:1300   GUGCUCUCUCUCUUCUGUCA   1319

2.0 PREDICTED: Brassica rapa squamosa promoter-binding-like protein 11 (LOC103829069), transcript variant X1, mRNA squamosa promoter-binding-like protein 11(LOC103829069) coding protein psRNATarget
XM_018655172.1
ncRNA:20   CACGAGUGAGAGAAGACAGC   1
  ||||||*||||||||||||*
targets:1235   GUGCUCUCUCUCUUCUGUCA   1254

2.0 PREDICTED: Brassica rapa squamosa promoter-binding-like protein 10 (LOC103839042), transcript variant X1, mRNA NA coding protein psRNATarget
XM_009115520.2
ncRNA:20   CACGAGUGAGAGAAGACAGC   1
  ||||||*||||||||||||*
targets:1230   GUGCUCUCUCUCUUCUGUCA   1249

2.0 PREDICTED: Brassica rapa squamosa promoter-binding-like protein 10 (LOC103839042), transcript variant X2, mRNA squamosa promoter-binding-like protein 10(LOC103839042) coding protein psRNATarget
XM_009115759.2
ncRNA:20   CACGAGUGAGAGAAGACAGC   1
  ||||||*||||||||||||*
targets:1121   GUGCUCUCUCUCUUCUGUCA   1140

2.0 PREDICTED: Brassica rapa squamosa promoter-binding-like protein 2 (LOC103839253), transcript variant X2, mRNA squamosa promoter-binding-like protein 2(LOC103839253) coding protein psRNATarget
XM_009111566.2
ncRNA:20   CACGAGUGAGAGAAGACAGC   1
  ||||||*||||||||||||*
targets:1230   GUGCUCUCUCUCUUCUGUCA   1249

2.0 PREDICTED: Brassica rapa squamosa promoter-binding-like protein 10 (LOC103835406), transcript variant X2, mRNA squamosa promoter-binding-like protein 10(LOC103835406) coding protein psRNATarget
XM_009111568.2
ncRNA:20   CACGAGUGAGAGAAGACAGC   1
  ||||||*||||||||||||*
targets:1225   GUGCUCUCUCUCUUCUGUCA   1244

2.0 PREDICTED: Brassica rapa squamosa promoter-binding-like protein 10 (LOC103835406), transcript variant X3, mRNA squamosa promoter-binding-like protein 10(LOC103835406) coding protein psRNATarget
XM_009129458.2
ncRNA:20   CACGAGUGAGAGAAGACAGC   1
  ||||||*||||||||||||*
targets:966   GUGCUCUCUCUCUUCUGUCA   985

2.0 PREDICTED: Brassica rapa squamosa promoter-binding-like protein 6 (LOC103852554), mRNA squamosa promoter-binding-like protein 6(LOC103852554) coding protein psRNATarget
XM_009105834.2
ncRNA:20   CACGAGUGAGAGAAGACAGC   1
  ||||||*||||||||||||*
targets:745   GUGCUCUCUCUCUUCUGUCA   764

2.0 PREDICTED: Brassica rapa squamosa promoter-binding-like protein 15 (LOC103830125), mRNA squamosa promoter-binding-like protein 15(LOC103830125) coding protein psRNATarget
XM_009107215.2
ncRNA:20   CACGAGUGAGAGAAGACAGC   1
  |||||==||||||||||||*
targets:824   GUGCUUGCUCUCUUCUGUCA   843

3.0 PREDICTED: Brassica rapa squamosa promoter-binding-like protein 6 (LOC103831318), transcript variant X2, mRNA squamosa promoter-binding-like protein 6(LOC103831318) coding protein psRNATarget
XM_009107214.2
ncRNA:20   CACGAGUGAGAGAAGACAGC   1
  |||||==||||||||||||*
targets:817   GUGCUUGCUCUCUUCUGUCA   836

3.0 PREDICTED: Brassica rapa squamosa promoter-binding-like protein 6 (LOC103831318), transcript variant X1, mRNA squamosa promoter-binding-like protein 6(LOC103831318) coding protein psRNATarget
XM_009145581.2
ncRNA:20   CACGAGUGAGAGAAGACAGC   1
  *||||==||||||||||||*
targets:701   UUGCUUGCUCUCUUCUGUCA   720

3.0 PREDICTED: Brassica rapa squamosa promoter-binding-like protein 3 (LOC103867507), mRNA squamosa promoter-binding-like protein 3(LOC103867507) coding protein psRNATarget
XM_009143099.2
ncRNA:20   CACGAGUGAGAGAAGACAGC   1
  *||||==||||||||||||*
targets:606   UUGCUUGCUCUCUUCUGUCA   625

3.0 PREDICTED: Brassica rapa squamosa promoter-binding-like protein 3 (LOC103865301), mRNA squamosa promoter-binding-like protein 3(LOC103865301) coding protein psRNATarget
XM_009134706.2
ncRNA:20   CACGAGUGAGAGAAGACAGC   1
  *||||==||||||||||||*
targets:550   UUGCUUGCUCUCUUCUGUCA   569

3.0 PREDICTED: Brassica rapa squamosa promoter-binding-like protein 3 (LOC103857508), mRNA squamosa promoter-binding-like protein 3(LOC103857508) coding protein psRNATarget
XM_009115522.2
ncRNA:20   CACGAGUGAGAGAAGACAGC   1
  |||||=*||||||||||||*
targets:1297   GUGCUUUCUCUCUUCUGUCA   1316

3.0 PREDICTED: Brassica rapa squamosa promoter-binding-like protein 11 (LOC103839045), transcript variant X1, mRNA squamosa promoter-binding-like protein 11(LOC103839045) coding protein psRNATarget
XM_009115524.2
ncRNA:20   CACGAGUGAGAGAAGACAGC   1
  |||||=*||||||||||||*
targets:1234   GUGCUUUCUCUCUUCUGUCA   1253

3.0 PREDICTED: Brassica rapa squamosa promoter-binding-like protein 11 (LOC103839045), transcript variant X3, mRNA squamosa promoter-binding-like protein 11(LOC103839045) coding protein psRNATarget
XM_009115523.2
ncRNA:20   CACGAGUGAGAGAAGACAGC   1
  |||||=*||||||||||||*
targets:1226   GUGCUUUCUCUCUUCUGUCA   1245

3.0 PREDICTED: Brassica rapa squamosa promoter-binding-like protein 11 (LOC103839045), transcript variant X2, mRNA squamosa promoter-binding-like protein 11(LOC103839045) coding protein psRNATarget
XM_009115526.2
ncRNA:20   CACGAGUGAGAGAAGACAGC   1
  |||||=*||||||||||||*
targets:1206   GUGCUUUCUCUCUUCUGUCA   1225

3.0 PREDICTED: Brassica rapa squamosa promoter-binding-like protein 11 (LOC103839045), transcript variant X4, mRNA squamosa promoter-binding-like protein 11(LOC103839045) coding protein psRNATarget
XM_009140754.2
ncRNA:20   CACGAGUGAGAGAAGACAGC   1
  |||=||*||||||||||||*
targets:793   GUGUUCUCUCUCUUCUGUCA   812

3.0 PREDICTED: Brassica rapa squamosa promoter-binding-like protein 15 (LOC103863019), transcript variant X1, mRNA squamosa promoter-binding-like protein 15(LOC103863019) coding protein psRNATarget
XM_009140755.2
ncRNA:20   CACGAGUGAGAGAAGACAGC   1
  |||=||*||||||||||||*
targets:766   GUGUUCUCUCUCUUCUGUCA   785

3.0 PREDICTED: Brassica rapa squamosa promoter-binding-like protein 15 (LOC103863019), transcript variant X2, mRNA squamosa promoter-binding-like protein 15(LOC103863019) coding protein psRNATarget
XM_009134452.2
ncRNA:20   CACGAGUGAGAGAAGACAGC   1
  |*||||*||||||||||||*
targets:1153   GCGCUCUCUCUCUUCUGUCA   1172

3.0 PREDICTED: Brassica rapa squamosa promoter-binding-like protein 13A (LOC103857275), transcript variant X3, mRNA squamosa promoter-binding-like protein 13A(LOC103857275) coding protein psRNATarget
XM_009134450.2
ncRNA:20   CACGAGUGAGAGAAGACAGC   1
  |*||||*||||||||||||*
targets:1060   GCGCUCUCUCUCUUCUGUCA   1079

3.0 PREDICTED: Brassica rapa squamosa promoter-binding-like protein 13A (LOC103857275), transcript variant X1, mRNA squamosa promoter-binding-like protein 13A(LOC103857275) coding protein psRNATarget
XM_009134451.2
ncRNA:20   CACGAGUGAGAGAAGACAGC   1
  |*||||*||||||||||||*
targets:1044   GCGCUCUCUCUCUUCUGUCA   1063

3.0 PREDICTED: Brassica rapa squamosa promoter-binding-like protein 13A (LOC103857275), transcript variant X2, mRNA squamosa promoter-binding-like protein 13A(LOC103857275) coding protein psRNATarget
XM_009148024.2
ncRNA:20   CACGAGUGAGAGAAGACAGC   1
  **||||*||||||||||||*
targets:1075   CCGCUCUCUCUCUUCUGUCA   1094

3.0 PREDICTED: Brassica rapa squamosa promoter-binding-like protein 5 (LOC103869942), mRNA squamosa promoter-binding-like protein 5(LOC103869942) coding protein psRNATarget
XM_009117412.2
ncRNA:20   CACGAGUGAGAGAAGACAGC   1
  **||||*||||||||||||*
targets:635   CAGCUCUCUCUCUUCUGUCA   654

3.0 PREDICTED: Brassica rapa squamosa promoter-binding-like protein 5 (LOC103840895), mRNA squamosa promoter-binding-like protein 5(LOC103840895) coding protein psRNATarget
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