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BaseInfo

ncRNA ID novel_bra_miR198
Species Brassica rapa
Class miRNA
Genome position ChrA6:24401714-24401771 [+]
Reference genome Brapa_1.0
Source SRR1592475;SRR1592477;SRR1776796;SRR1776877;SRR1776880;SRR1776889;SRR1776899;SRR1777714
Length 24
Mature sequence(if miRNA) 1 - AAAACUGUGUAACCAAUUAGAUGU - 24
Stem-loop(if miRNA) --    CU  G          G U   GU
  AAAA  GU UAACCAAUUA A GUU  A
  ||||  || |||||||||| | |||
  UUUU  UA GUUGGUUAAU U UAG  A
AU    AG  G          G C   UU
Stem-loop sequence AAAACUGUGUAACCAAUUAGAUGUUGUAAUUGAUCUGUAAUUGGUUGGAUGAUUUUUA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_009145191.2
ncRNA:24   UGUAGAUUAACCAAUGUGUCAAAA   1
  *=*||*||||*||||||||||||*
targets:290   CUUUCAAAUUCGUUACACAGUUUC   313

3.0 PREDICTED: Brassica rapa uncharacterized LOC103867153 (LOC103867153), mRNA uncharacterized LOC103867153(LOC103867153) coding protein psRNATarget