| ncRNA ID | novel_bra_miR197 |
| Species | Brassica rapa |
| Class | miRNA |
| Genome position | ChrA6:22669253-22669404 [+] |
| Reference genome | Brapa_1.0 |
| Source | SRR1592475;SRR1592478;SRR1776877;SRR1776899;SRR2912893;SRR1125021 |
| Length | 19 |
| Mature sequence(if miRNA) | 134 - GGCAGUCUCCUUGGCUAUU - 152 |
| Stem-loop(if miRNA) |
-- U U -CU UUC UC -C -U UACGUUGAAGGGUUUUGGAUUAUUG UAGCCAAGGA GACU GCCUG CUUG ACC CA GAUUCAAC UUA U |||||||||| |||| ||||| |||| ||| || |||||||| ||| AUCGGUUCCU CUGA CGGAC GGAU UGG GU CUAAGUUG CUA G UU - - UUU --- GU UU UA AAGUUUAAUAAUAUGUACAACUUAC |
| Stem-loop sequence | UAGCCAAGGAUGACUUGCCUGCUCUUGUUCACCUCCACGAUUCAACUUUAUACGUUGAAGGGUUUUGGAUUAUUGUGCAUUCAACAUGUAUAAUAAUUUGAAAUCAUGUUGAAUCUUUGUGGGUUAGGUUUCAGGCAGUCUCCUUGGCUAUU |
| Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| XM_009147408.2 |
|
2.5 | PREDICTED: Brassica rapa pumilio homolog 5 (LOC103869342), transcript variant X2, mRNA | pumilio homolog 5(LOC103869342) | coding protein | psRNATarget | |||||||||
| XM_009147407.2 |
|
2.5 | PREDICTED: Brassica rapa pumilio homolog 5 (LOC103869342), transcript variant X1, mRNA | pumilio homolog 5(LOC103869342) | coding protein | psRNATarget |