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BaseInfo

ncRNA ID	novel_bra_miR196
Species	Brassica rapa
Class	miRNA
Genome position	ChrA6:1337080-1337183 [+]
Reference genome	Brapa_1.0
Source	SRR1161445;SRR1485266;SRR1485267;SRR1485268;SRR1485269;SRR1485274
Length	21
Mature sequence(if miRNA)	1 - ACUUUGAAACUUUGAUCUAGA - 21
Stem-loop(if miRNA)	--  U     A           AU      -          A     CCACU   AC UUGAA CUUUGAUCUAG  CUAACA UUUGGUAUCA AGCUU     C   || ||||| |||||||||||  |||||| |||||||||| |||||     C   UG AAUUU GAAACUAGAUC  GAUUGU AAACCAUAGU UCGAA     A GU  U     C           AC      U          C     AUAAU
Stem-loop sequence	ACUUUGAAACUUUGAUCUAGAUCUAACAUUUGGUAUCAAAGCUUCCACUCCAUAAUAAAGCUCUGAUACCAAAUUGUUAGCACUAGAUCAAAGCUUUAAUGUUG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_009138242.2	ncRNA:21   AGAUCUAGUUUCAAAGUUUCA   1   **||||**||||||||||||| targets:2722   AAUAGAAAAAAGUUUCAAAGU   2742 Target Full Sequence	2.0	PREDICTED: Brassica rapa U-box domain-containing protein 51 (LOC103860604), transcript variant X3, mRNA	U-box domain-containing protein 51(LOC103860604)	coding protein	psRNATarget
XM_009138243.2	ncRNA:21   AGAUCUAGUUUCAAAGUUUCA   1   **||||**||||||||||||| targets:2728   AAUAGAAAAAAGUUUCAAAGU   2748 Target Full Sequence	2.0	PREDICTED: Brassica rapa U-box domain-containing protein 51 (LOC103860604), transcript variant X2, mRNA	U-box domain-containing protein 51(LOC103860604)	coding protein	psRNATarget
XM_009138241.2	ncRNA:21   AGAUCUAGUUUCAAAGUUUCA   1   **||||**||||||||||||| targets:2813   AAUAGAAAAAAGUUUCAAAGU   2833 Target Full Sequence	2.0	PREDICTED: Brassica rapa U-box domain-containing protein 51 (LOC103860604), transcript variant X1, mRNA	U-box domain-containing protein 51(LOC103860604)	coding protein	psRNATarget