Search result

BaseInfo

ncRNA ID novel_bra_miR195
Species Brassica rapa
Class miRNA
Genome position ChrA6:20409122-20409233 [+]
Reference genome Brapa_1.0
Source SRR1592475;SRR1776877;SRR1776899;SRR1777714
Length 24
Mature sequence(if miRNA) 1 - AUGUAGCGACCGAGCGGGACGAUC - 24
Stem-loop(if miRNA) --              C    -C  U        C               A   CGA
  AUGUAGCGACCGAG GGGA  GA CGCUCGGU GCUACGUAGCGACCG GCU   G
  |||||||||||||| ||||  || |||||||| ||||||||||||||| |||
  UGUAUCGCUGGCUC CCCU  CU GCGAGCCA CGAUGCAUCGUUGGC CGA   C
GA              A    AA  -        A               C   AAC
Stem-loop sequence AUGUAGCGACCGAGCGGGACGAUCGCUCGGUCGCUACGUAGCGACCGAGCUCGAGCCAAAGCCCGGUUGCUACGUAGCAACCGAGCGUCAAUCCCACUCGGUCGCUAUGUAG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_009126102.1
ncRNA:24   CUAGCAGGGCGAGCCAGCGAUGUA   1
  |=|||||||||||||||||||=||
targets:536   GGUCGUCCCGCUCGGUCGCUAUAU   559

1.5 PREDICTED: Brassica rapa uncharacterized LOC103849316 (LOC103849316), mRNA uncharacterized LOC103849316(LOC103849316) coding protein psRNATarget