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BaseInfo

ncRNA ID novel_bra_miR181
Species Brassica rapa
Class miRNA
Genome position ChrA5:14911350-14911528 [+]
Reference genome Brapa_1.0
Source SRR1592475;SRR1592476;SRR1592478
Length 24
Mature sequence(if miRNA) 1 - AGAGUGGGAUAUAGAGUGGGGUUG - 24
Stem-loop(if miRNA) --      GG           G    GAGAAGA           ---A       UU         ---   AGA   --GG          C  
  AGAGUG  AUAUAGAGUGG GUUG       UUUUACUUUAU    AUAGAGU  AGUGUAGAA   AAU   GUG    GUUGGAGAUG UCU
  ||||||  ||||||||||| ||||       |||||||||||    |||||||  |||||||||   |||   |||    |||||||||| ||U
  UCUCAC  UAUAUCUCAUU CAAC       AAAGUGAGGUA    UAUCUCA  UUAUAUUUU   UUA   CAC    UAACCUCUAC AGA
UA      UU           A    ----GAA           AUAA       UU         AUU   AAA   AUGG          C  
Stem-loop sequence AGAGUGGGAUAUAGAGUGGGGUUGGAGAAGAUUUUACUUUAUAAUAGAGUUUAGUGUAGAAAAUAGAGUGGGGUUGGAGAUGCUCUUAGACCAUCUCCAAUGGUACACAAAAUUUUAUUUUAUAUUUUACUCUAUAAUAAUGGAGUGAAAAAGCAACAUUACUCUAUAUUUCACUCUAU