ncRNA ID | novel_bra_miR181 |
Species | Brassica rapa |
Class | miRNA |
Genome position | ChrA5:14911350-14911528 [+] |
Reference genome | Brapa_1.0 |
Source | SRR1592475;SRR1592476;SRR1592478 |
Length | 24 |
Mature sequence(if miRNA) | 1 - AGAGUGGGAUAUAGAGUGGGGUUG - 24 |
Stem-loop(if miRNA) |
--      GG           G    GAGAAGA           ---A       UU         ---   AGA   --GG          C     AGAGUG  AUAUAGAGUGG GUUG       UUUUACUUUAU    AUAGAGU  AGUGUAGAA   AAU   GUG    GUUGGAGAUG UCU   ||||||  ||||||||||| ||||       |||||||||||    |||||||  |||||||||   |||   |||    |||||||||| ||U   UCUCAC  UAUAUCUCAUU CAAC       AAAGUGAGGUA    UAUCUCA  UUAUAUUUU   UUA   CAC    UAACCUCUAC AGA UA      UU           A    ----GAA           AUAA       UU         AUU   AAA   AUGG          C   |
Stem-loop sequence | AGAGUGGGAUAUAGAGUGGGGUUGGAGAAGAUUUUACUUUAUAAUAGAGUUUAGUGUAGAAAAUAGAGUGGGGUUGGAGAUGCUCUUAGACCAUCUCCAAUGGUACACAAAAUUUUAUUUUAUAUUUUACUCUAUAAUAAUGGAGUGAAAAAGCAACAUUACUCUAUAUUUCACUCUAU |