| ncRNA ID | novel_bra_miR171 |
| Species | Brassica rapa |
| Class | miRNA |
| Genome position | ChrA3:4507052-4507120 [-] |
| Reference genome | Brapa_1.0 |
| Source | SRR1592475;SRR1592476;SRR1592478;SRR2912894 |
| Length | 24 |
| Mature sequence(if miRNA) | 1 - AUGACGGUAUCUCUCCUACGUAGC - 24 |
| Stem-loop(if miRNA) |
--UU C G C - - UU CG AGGAGAGAUA CG CAUCA C A UUCU || |||||||||| || ||||| | | |||A GC UCCUCUCUAU GC GUAGU G U GAGA CGAU A G A C A UU |
| Stem-loop sequence | UUCGCAGGAGAGAUAGCGCCAUCACAUUUUCUAAGAGUUUAGCUGAUGACGGUAUCUCUCCUACGUAGC |
| Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| XM_009102987.2 |
|
2.5 | PREDICTED: Brassica rapa protein kinase 2B, chloroplastic-like (LOC103827504), mRNA | protein kinase 2B, chloroplastic-like(LOC103827504) | coding protein | psRNATarget | |||||||||
| XM_018655740.1 |
|
3.0 | PREDICTED: Brassica rapa inactive protein kinase SELMODRAFT_444075-like (LOC103845110), mRNA | NA | coding protein | psRNATarget |