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BaseInfo

ncRNA ID	novel_bra_miR168
Species	Brassica rapa
Class	miRNA
Genome position	ChrA3:9349302-9349386 [+]
Reference genome	Brapa_1.0
Source	SRR1160826
Length	21
Mature sequence(if miRNA)	1 - UAUGCCUGGCUCCCUGUAUGC - 21
Stem-loop(if miRNA)	--     C       CU         A   UA  U  AU  A   UAUGC UGGCUCC  GUAUGCCAU CAC  AG UC  CG U   ||||| |||||||  ||||||||| |||  || ||  || C   AUACG ACCGAGG  UAUGCGGUA GUG  UC AG  GC C UA     A       AG         G   CC  C  CG  U
Stem-loop sequence	UAUGCCUGGCUCCCUGUAUGCCAUACACUAAGUUCAUCGAUCCUCGGCGACCUCCGUGGAUGGCGUAUGAGGAGCCAAGCAUAAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
JN979477.1	ncRNA:21   CGUAUGUCCCUCGGUCCGUAU   1   |=*|||||||||||||||||| targets:1298   GUUUACAGGGAGCCAGGCAUA   1318 Target Full Sequence	1.0	Brassica rapa subsp. pekinensis auxin response factor 16-1 (ARF16-1) mRNA, complete cds	NA	coding protein	psRNATarget
JN979478.1	ncRNA:21   CGUAUGUCCCUCGGUCCGUAU   1   |=*|||||||||||||||||| targets:1442   GUUUACAGGGAGCCAGGCAUA   1462 Target Full Sequence	1.0	Brassica rapa subsp. pekinensis auxin response factor 16-2 (ARF16-2) mRNA, complete cds	NA	coding protein	psRNATarget
XM_009129881.2	ncRNA:21   CGUAUGUCCCUCGGUCCGUAU   1   |=*|||||||||||||||||| targets:1537   GUUUACAGGGAGCCAGGCAUA   1557 Target Full Sequence	1.0	PREDICTED: Brassica rapa auxin response factor 16 (ARF16-1), mRNA	auxin response factor 16(ARF16-1)	coding protein	psRNATarget
XM_009139640.2	ncRNA:21   CGUAUGUCCCUCGGUCCGUAU   1   |=*|||||||||||||||||| targets:1525   GUUUACAGGGAGCCAGGCAUA   1545 Target Full Sequence	1.0	PREDICTED: Brassica rapa auxin response factor 16 (ARF16-2), mRNA	auxin response factor 16(ARF16-2)	coding protein	psRNATarget
JN979480.1	ncRNA:21   CGUAUGUCCCUCGGUCCGUAU   1   ||||=|||||||||||||||* targets:1259   GCAUGCAGGGAGCCAGGCAUU   1279 Target Full Sequence	2.0	Brassica rapa subsp. pekinensis auxin response factor 17-2 (ARF17-2) mRNA, complete cds	NA	coding protein	psRNATarget
JN979479.1	ncRNA:21   CGUAUGUCCCUCGGUCCGUAU   1   ||||=|||||||||||||||* targets:1241   GCAUGCAGGGAGCCAGGCAUU   1261 Target Full Sequence	2.0	Brassica rapa subsp. pekinensis auxin response factor 17-1 (ARF17-1) mRNA, complete cds	NA	coding protein	psRNATarget
XM_009106351.2	ncRNA:21   CGUAUGUCCCUCGGUCCGUAU   1   ||||=|||||||||||||||* targets:1350   GCAUGCAGGGAGCCAGGCAUU   1370 Target Full Sequence	2.0	PREDICTED: Brassica rapa auxin response factor 17 (ARF17-1), mRNA	auxin response factor 17(ARF17-1)	coding protein	psRNATarget
XM_009108179.2	ncRNA:21   CGUAUGUCCCUCGGUCCGUAU   1   ||||=|||||||||||||||* targets:1381   GCAUGCAGGGAGCCAGGCAUU   1401 Target Full Sequence	2.0	PREDICTED: Brassica rapa auxin response factor 17 (ARF17-2), mRNA	auxin response factor 17(ARF17-2)	coding protein	psRNATarget
JN979475.1	ncRNA:21   CGUAUGUCCCUCGGUCCGUAU   1   |*|||||||||||||||||*= targets:1355   GAAUACAGGGAGCCAGGCAAG   1375 Target Full Sequence	2.5	Brassica rapa subsp. pekinensis auxin response factor 10 (ARF10) mRNA, complete cds	NA	coding protein	psRNATarget
XM_009105431.2	ncRNA:21   CGUAUGUCCCUCGGUCCGUAU   1   |*|||||||||||||||||*= targets:1438   GAAUACAGGGAGCCAGGCAAG   1458 Target Full Sequence	2.5	PREDICTED: Brassica rapa auxin response factor 10 (ARF10), transcript variant X2, mRNA	auxin response factor 10(ARF10)	coding protein	psRNATarget
XM_009105430.2	ncRNA:21   CGUAUGUCCCUCGGUCCGUAU   1   |*|||||||||||||||||*= targets:1525   GAAUACAGGGAGCCAGGCAAG   1545 Target Full Sequence	2.5	PREDICTED: Brassica rapa auxin response factor 10 (ARF10), transcript variant X1, mRNA	auxin response factor 10(ARF10)	coding protein	psRNATarget