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BaseInfo

ncRNA ID novel_bra_miR162
Species Brassica rapa
Class miRNA
Genome position ChrA3:19514211-19514429 [+]
Reference genome Brapa_1.0
Source SRR1592475
Length 24
Mature sequence(if miRNA) 196 - AAAAAAUGGAGUGAGGAUGGAGAU - 219
Stem-loop(if miRNA) --     A  AAA             CUCC     A        AA     A   U   -UAAAU         CCUAA    U         ----A  AGCAAACAAAAAAUAG
  CUUCA UU   ACUCCAUUUUUUC    AAAAU GAGUAAAA  GUGAA AUG AGU      UGCUCCAAC     UCAA CUCCAUAAU     UG                A
  ||||| ||   |||||||||||||    ||||| ||||||||  ||||| ||| |||      |||||||||     |||| |||||||||     ||                U
  GAGGU AG   UGAGGUAAAAAAG    UUUUA CUCAUUUU  UAUUU UAC UCA      AUGAGGUUG     AGUU GAGGUAUUA     AA                U
UA     -  GAG             AAAA     C        --     A   C   UUCUUU         -----    -         CUUUA  UGAAGUAUUUACCUCA
Stem-loop sequence CUUCAAUUAAAACUCCAUUUUUUCCUCCAAAAUAGAGUAAAAAAGUGAAAAUGUAGUUAAAUUGCUCCAACCCUAAUCAAUCUCCAUAAUAUGAGCAAACAAAAAAUAGAUUACUCCAUUUAUGAAGUAAAUUUCAUUAUGGAGUUGAGUUGGAGUAUUUCUUACUCCAUAUUUAUUUUUACUCCAUUUUAAAAGAAAAAAUGGAGUGAGGAUGGAGAU