ncRNA ID | novel_bra_miR162 |
Species | Brassica rapa |
Class | miRNA |
Genome position | ChrA3:19514211-19514429 [+] |
Reference genome | Brapa_1.0 |
Source | SRR1592475 |
Length | 24 |
Mature sequence(if miRNA) | 196 - AAAAAAUGGAGUGAGGAUGGAGAU - 219 |
Stem-loop(if miRNA) |
--     A  AAA             CUCC     A        AA     A   U   -UAAAU         CCUAA    U         ----A  AGCAAACAAAAAAUAG   CUUCA UU   ACUCCAUUUUUUC    AAAAU GAGUAAAA  GUGAA AUG AGU      UGCUCCAAC     UCAA CUCCAUAAU     UG                A   ||||| ||   |||||||||||||    ||||| ||||||||  ||||| ||| |||      |||||||||     |||| |||||||||     ||                U   GAGGU AG   UGAGGUAAAAAAG    UUUUA CUCAUUUU  UAUUU UAC UCA      AUGAGGUUG     AGUU GAGGUAUUA     AA                U UA     -  GAG             AAAA     C        --     A   C   UUCUUU         -----    -         CUUUA  UGAAGUAUUUACCUCA |
Stem-loop sequence | CUUCAAUUAAAACUCCAUUUUUUCCUCCAAAAUAGAGUAAAAAAGUGAAAAUGUAGUUAAAUUGCUCCAACCCUAAUCAAUCUCCAUAAUAUGAGCAAACAAAAAAUAGAUUACUCCAUUUAUGAAGUAAAUUUCAUUAUGGAGUUGAGUUGGAGUAUUUCUUACUCCAUAUUUAUUUUUACUCCAUUUUAAAAGAAAAAAUGGAGUGAGGAUGGAGAU |