ncRNA ID | novel_bra_miR159 |
Species | Brassica rapa |
Class | miRNA |
Genome position | ChrA3:8324377-8324542 [+] |
Reference genome | Brapa_1.0 |
Source | SRR1160826 |
Length | 24 |
Mature sequence(if miRNA) | 143 - AGAGGCAUACAUUGGAGUAAAUCC - 166 |
Stem-loop(if miRNA) |
--                    G  A  A          A    A  U              AUU G       -C       A   AUUUGCUCCAAUGUAUGCCU UA AA AGAGUUCCUC AUUU UA GGGAAAAUAUAGAG   U CUAUUUU  AUCUCUA A   |||||||||||||||||||| || || |||||||||| |||| || ||||||||||||||   | |||||||  |||||||   UAAAUGAGGUUACAUACGGA AU UU UCUCAAGGAG UAAA AU UCCUUUUAUAUCUC   A GAUGAAA  UGGAGAU U CC                    G  A  A          A    -  U              CUU G       AA       A |
Stem-loop sequence | AUUUGCUCCAAUGUAUGCCUGUAAAAAAGAGUUCCUCAAUUUAUAUGGGAAAAUAUAGAGAUUUGCUAUUUUCAUCUCUAAAUAUAGAGGUAAAAAGUAGGAUUCCUCUAUAUUUUCCUUUAAAAUAGAGGAACUCUAUUAUAGAGGCAUACAUUGGAGUAAAUCC |