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BaseInfo

ncRNA ID novel_bra_miR158
Species Brassica rapa
Class miRNA
Genome position ChrA2:4956766-4956836 [-]
Reference genome Brapa_1.0
Source SRR1592475;SRR1592478
Length 24
Mature sequence(if miRNA) 48 - AGAACGAGUCAGCUCUGGUGGUAA - 71
Stem-loop(if miRNA) --  AA      -     U      AA         G
  AG  CGAGUC AGCUC GGUGGU  AGGAGUUGC G
  ||  |||||| ||||| ||||||  |||||||||
  UC  GCUUAG UUGGG CCACCG  UCUUCAAUG G
GG  GC      C     C      --         C
Stem-loop sequence AGAACGAGUCAGCUCUGGUGGUAAAGGAGUUGCGGGCGUAACUUCUGCCACCCGGGUUCGAUUCGCGCUGG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_009127893.1
ncRNA:24   AA-UGGUGGUCUCGACUGAGCAAGA   1
  ||-|=||||||*||||||||||||*
targets:198   UUGAUCACCAGCGCUGACUCGUUCG   222

2.0 PREDICTED: Brassica rapa uncharacterized LOC103851065 (LOC103851065), mRNA uncharacterized LOC103851065(LOC103851065) coding protein psRNATarget