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BaseInfo

ncRNA ID	novel_bra_miR155
Species	Brassica rapa
Class	miRNA
Genome position	ChrA2:7378666-7378718 [-]
Reference genome	Brapa_1.0
Source	SRR1592475;SRR1592477;SRR1592478;SRR1776899
Length	23
Mature sequence(if miRNA)	1 - UGCGGUUUGAGCGGUGCGGGAUA - 23
Stem-loop(if miRNA)	--   G    A  ------A    A    A   UCU GCGC CG       CGCA UCGU C   ||| |||| ||       |||| ||||   AGG CGUG GC       GCGU AGUA U AU   G    -  GAGUUUG    C    A
Stem-loop sequence	UCUGGCGCACGACGCAAUCGUACUAAUGACUGCGGUUUGAGCGGUGCGGGAUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_009143228.1	ncRNA:23   AUAGGGCGUGGCGAGUUUGGCGU   1   |=||||||||||||||||||||| targets:1   UGUCCCGCACCGCUCAAACCGCA   23 Target Full Sequence	0.0	PREDICTED: Brassica rapa uncharacterized LOC103865439 (LOC103865439), mRNA	uncharacterized LOC103865439(LOC103865439)	coding protein	psRNATarget
XM_018654000.1	ncRNA:23   AUAGGGCGUGGCGAGUUUGGCGU   1   |=||||*=||||||||||||||| targets:11   UGUCCCAUACCGCUCAAACCGCA   33 Target Full Sequence	2.0	PREDICTED: Brassica rapa putative acyl-activating enzyme 19 (LOC103833690), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_018659499.1	ncRNA:23   AUAGGGCGUGGCGAGUUUGGCGU   1   |=||||||||||||=|||||||* targets:94   UGUCCCGCACCGCUUAAACCGCU   116 Target Full Sequence	2.5	PREDICTED: Brassica rapa squalene epoxidase 4 (LOC103874805), mRNA	NA	coding protein	psRNATarget
XM_009145231.2	ncRNA:23   AUAGGGCGUGGCGAGUUUGGCGU   1   *=****||||||||||||||||* targets:930   AGGGAAGCACCGCUCAAACCGCU   952 Target Full Sequence	3.0	PREDICTED: Brassica rapa origin of replication complex subunit 2 (LOC103867184), mRNA	origin of replication complex subunit 2(LOC103867184)	coding protein	psRNATarget