ncRNA ID | novel_bra_miR152 |
Species | Brassica rapa |
Class | miRNA |
Genome position | ChrA10:15157833-15157953 [-] |
Reference genome | Brapa_1.0 |
Source | SRR1592475;SRR1592477;SRR1592478 |
Length | 21 |
Mature sequence(if miRNA) | 101 - AUUGAGAAAAUGGAGUGGGAA - 121 |
Stem-loop(if miRNA) |
--                       A    A            -      G      CCAU   AUUGAGAAAAUGGAGUGGGAAAU GAGU AUGAAUAAAAAA UAAAAG AUUACU    U   ||||||||||||||||||||||| |||| |||||||||||| |||||| ||||||   UAACUUUUUUACUUUACCCUUUA CUCA UACUUGUUUUUU AUUUUC UAAUGA    U UU                       C    C            U      G      AAUA |
Stem-loop sequence | AUUGAGAAAAUGGAGUGGGAAAUAGAGUAAUGAAUAAAAAAUAAAAGGAUUACUCCAUUUAUAAAGUAAUGCUUUUAUUUUUUUGUUCAUCACUCCAUUUCCCAUUUCAUUUUUUCAAUUU |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
XM_009112636.2 |
|
3.0 | PREDICTED: Brassica rapa leucine-rich repeat receptor-like protein kinase PXL1 (LOC103836383), mRNA | leucine-rich repeat receptor-like protein kinase PXL1(LOC103836383) | coding protein | psRNATarget |