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BaseInfo

ncRNA ID novel_bra_miR152
Species Brassica rapa
Class miRNA
Genome position ChrA10:15157833-15157953 [-]
Reference genome Brapa_1.0
Source SRR1592475;SRR1592477;SRR1592478
Length 21
Mature sequence(if miRNA) 101 - AUUGAGAAAAUGGAGUGGGAA - 121
Stem-loop(if miRNA) --                       A    A            -      G      CCAU
  AUUGAGAAAAUGGAGUGGGAAAU GAGU AUGAAUAAAAAA UAAAAG AUUACU    U
  ||||||||||||||||||||||| |||| |||||||||||| |||||| ||||||
  UAACUUUUUUACUUUACCCUUUA CUCA UACUUGUUUUUU AUUUUC UAAUGA    U
UU                       C    C            U      G      AAUA
Stem-loop sequence AUUGAGAAAAUGGAGUGGGAAAUAGAGUAAUGAAUAAAAAAUAAAAGGAUUACUCCAUUUAUAAAGUAAUGCUUUUAUUUUUUUGUUCAUCACUCCAUUUCCCAUUUCAUUUUUUCAAUUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_009112636.2
ncRNA:21   AAGGGUGAGGUAAAAGAGUUA   1
  **|==|||||||||||||||*
targets:1715   ACCUUACUCCAUUUUCUCAAG   1735

3.0 PREDICTED: Brassica rapa leucine-rich repeat receptor-like protein kinase PXL1 (LOC103836383), mRNA leucine-rich repeat receptor-like protein kinase PXL1(LOC103836383) coding protein psRNATarget