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BaseInfo

ncRNA ID novel_bra_miR147
Species Brassica rapa
Class miRNA
Genome position ChrA10:17200531-17200589 [-]
Reference genome Brapa_1.0
Source SRR1592475;SRR1592477;SRR1592478;SRR1776877;SRR1777714
Length 24
Mature sequence(if miRNA) 36 - AAAACUGUGUAACCAAUUAGAUGU - 59
Stem-loop(if miRNA) --    CU  G          G   UUAU
  AAAA  GU UAACCAAUUA AUG    A
  ||||  || |||||||||| |||    G
  UUUU  UA GUUGGUUAAU UAU    U
AU    AG  A          G   UUAC
Stem-loop sequence AAAACUGUGUAACCAAUUAGAUGUUAUAGUCAUUUAUGUAAUUGGUUGAAUGAUUUUUA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_009145191.2
ncRNA:24   UGUAGAUUAACCAAUGUGUCAAAA   1
  *=*||*||||*||||||||||||*
targets:290   CUUUCAAAUUCGUUACACAGUUUC   313

3.0 PREDICTED: Brassica rapa uncharacterized LOC103867153 (LOC103867153), mRNA uncharacterized LOC103867153(LOC103867153) coding protein psRNATarget