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BaseInfo

ncRNA ID novel_bra_miR144
Species Brassica rapa
Class miRNA
Genome position ChrA6:552839-552917 [-]
Reference genome Brapa_1.0
Source SRR1485289;SRR1592475;SRR1592476;SRR1592477;SRR1776796;SRR1776877;SRR1776889;SRR1776899;SRR1777714;SRR2912891;SRR2912893;SRR2912894
Length 21
Mature sequence(if miRNA) 59 - UGAGCCAAAGAUGACUUGCCG - 79
Stem-loop(if miRNA) --U         A          AUUUUA    ---   ACC
   GAGCCAAAG UGACUUGCCG      CCAA   CAA   U
   ||||||||| ||||||||||      ||||   |||
   CUCGGUUUU GCUGAACGGC      GGUU   GUU   A
UGU         A          --CAUC    AUA   AAA
Stem-loop sequence UGAGCCAAAGAUGACUUGCCGAUUUUACCAACAAACCUAAAAUUGAUAUUGGCUACCGGCAAGUCGAUUUUGGCUCUGU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_009136601.1
ncRNA:21   GCCGUUCAGUAGAAACCGAGU   1
  =|||||*||||||||||||||
targets:1202   UGGCAACUCAUCUUUGGCUCA   1222

1.0 PREDICTED: Brassica rapa nuclear transcription factor Y subunit A-2-like (LOC103859112), transcript variant X1, mRNA nuclear transcription factor Y subunit A-2-like(LOC103859112) coding protein psRNATarget
XM_018656996.1
ncRNA:21   GCCGUUCAGUAGAAACCGAGU   1
  =|||||*||||||||||||||
targets:1260   UGGCAACUCAUCUUUGGCUCA   1280

1.0 PREDICTED: Brassica rapa nuclear transcription factor Y subunit A-2-like (LOC103859112), transcript variant X2, mRNA NA coding protein psRNATarget
XM_009124011.2
ncRNA:21   GCCGUUCAGUAGAAACCGAGU   1
  *|||||*||||||||||||||
targets:1123   AGGCAACUCAUCUUUGGCUCA   1143

1.0 PREDICTED: Brassica rapa nuclear transcription factor Y subunit A-10 (LOC103846990), transcript variant X4, mRNA nuclear transcription factor Y subunit A-10(LOC103846990) coding protein psRNATarget
XM_009124010.2
ncRNA:21   GCCGUUCAGUAGAAACCGAGU   1
  *|||||*||||||||||||||
targets:1125   AGGCAACUCAUCUUUGGCUCA   1145

1.0 PREDICTED: Brassica rapa nuclear transcription factor Y subunit A-10 (LOC103846990), transcript variant X3, mRNA nuclear transcription factor Y subunit A-10(LOC103846990) coding protein psRNATarget
XM_009124009.2
ncRNA:21   GCCGUUCAGUAGAAACCGAGU   1
  *|||||*||||||||||||||
targets:1130   AGGCAACUCAUCUUUGGCUCA   1150

1.0 PREDICTED: Brassica rapa nuclear transcription factor Y subunit A-10 (LOC103846990), transcript variant X2, mRNA nuclear transcription factor Y subunit A-10(LOC103846990) coding protein psRNATarget
XM_009124007.2
ncRNA:21   GCCGUUCAGUAGAAACCGAGU   1
  *|||||*||||||||||||||
targets:1133   AGGCAACUCAUCUUUGGCUCA   1153

1.0 PREDICTED: Brassica rapa nuclear transcription factor Y subunit A-10 (LOC103846990), transcript variant X1, mRNA nuclear transcription factor Y subunit A-10(LOC103846990) coding protein psRNATarget
XM_009126618.2
ncRNA:21   GCCGUUCAGUAGAAACCGAGU   1
  *|||||*||||||||||||||
targets:1135   AGGCAAAUCAUCUUUGGCUCA   1155

1.0 PREDICTED: Brassica rapa nuclear transcription factor Y subunit A-2-like (LOC103849907), transcript variant X3, mRNA nuclear transcription factor Y subunit A-2-like(LOC103849907) coding protein psRNATarget
XM_009126616.2
ncRNA:21   GCCGUUCAGUAGAAACCGAGU   1
  *|||||*||||||||||||||
targets:1143   AGGCAAAUCAUCUUUGGCUCA   1163

1.0 PREDICTED: Brassica rapa nuclear transcription factor Y subunit A-2-like (LOC103849907), transcript variant X1, mRNA nuclear transcription factor Y subunit A-2-like(LOC103849907) coding protein psRNATarget
XM_009126617.2
ncRNA:21   GCCGUUCAGUAGAAACCGAGU   1
  *|||||*||||||||||||||
targets:1143   AGGCAAAUCAUCUUUGGCUCA   1163

1.0 PREDICTED: Brassica rapa nuclear transcription factor Y subunit A-2-like (LOC103849907), transcript variant X2, mRNA nuclear transcription factor Y subunit A-2-like(LOC103849907) coding protein psRNATarget
XM_009135429.2
ncRNA:21   GCCGUUCAGUAGAAACCGAGU   1
  ||*|||**|||||||||||||
targets:692   CGCCAAUGCAUCUUUGGCUCA   712

3.0 PREDICTED: Brassica rapa ras-related protein RABH1b-like (LOC103858135), mRNA ras-related protein RABH1b-like(LOC103858135) coding protein psRNATarget
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