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BaseInfo

ncRNA ID novel_bra_miR142
Species Brassica rapa
Class miRNA
Genome position ChrA7:5755719-5755940 [+]
Reference genome Brapa_1.0
Source SRR1125021
Length 23
Mature sequence(if miRNA) 1 - AUAAUAGAGAUCUCUAAAAUAGA - 23
Stem-loop(if miRNA) --      G    C           A                                                              A      A    U       UGC
  AUAAUA AGAU UCUAAAAUAGA AAAAAAAUAGAGCUAGUGUUUUUGCUUCAAUGUGUUCCUUUAUAAUAGAAGAAUUCUAUAUU GCCUCU UAAA AGAGGAA   U
  |||||| |||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| |||||||   A
  UAUUAU UCUA AGAUUUUAUCU UUUUUUUAUCUCGAUCACAAAAACGAGGUUACACAAGGAAAUAUUAUCUUCUUAAGAUAUAA CGGAGA AUUU UCUCUUU   U
GA      A    U           C                                                              A      -    C       UUU
Stem-loop sequence AUAAUAGAGAUCUCUAAAAUAGAAAAAAAAAUAGAGCUAGUGUUUUUGCUUCAAUGUGUUCCUUUAUAAUAGAAGAAUUCUAUAUUAGCCUCUAUAAAUAGAGGAAUGCUAUUUUUUUCUCUCUUUAAGAGGCAAAUAUAGAAUUCUUCUAUUAUAAAGGAACACAUUGGAGCAAAAACACUAGCUCUAUUUUUUUCUCUAUUUUAGAUAUCUAUAUUAUAG