ncRNA ID | novel_bra_miR142 |
Species | Brassica rapa |
Class | miRNA |
Genome position | ChrA7:5755719-5755940 [+] |
Reference genome | Brapa_1.0 |
Source | SRR1125021 |
Length | 23 |
Mature sequence(if miRNA) | 1 - AUAAUAGAGAUCUCUAAAAUAGA - 23 |
Stem-loop(if miRNA) |
--      G    C           A                                                              A      A    U       UGC   AUAAUA AGAU UCUAAAAUAGA AAAAAAAUAGAGCUAGUGUUUUUGCUUCAAUGUGUUCCUUUAUAAUAGAAGAAUUCUAUAUU GCCUCU UAAA AGAGGAA   U   |||||| |||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| |||||||   A   UAUUAU UCUA AGAUUUUAUCU UUUUUUUAUCUCGAUCACAAAAACGAGGUUACACAAGGAAAUAUUAUCUUCUUAAGAUAUAA CGGAGA AUUU UCUCUUU   U GA      A    U           C                                                              A      -    C       UUU |
Stem-loop sequence | AUAAUAGAGAUCUCUAAAAUAGAAAAAAAAAUAGAGCUAGUGUUUUUGCUUCAAUGUGUUCCUUUAUAAUAGAAGAAUUCUAUAUUAGCCUCUAUAAAUAGAGGAAUGCUAUUUUUUUCUCUCUUUAAGAGGCAAAUAUAGAAUUCUUCUAUUAUAAAGGAACACAUUGGAGCAAAAACACUAGCUCUAUUUUUUUCUCUAUUUUAGAUAUCUAUAUUAUAG |