ncRNA ID | novel_bra_miR140 |
Species | Brassica rapa |
Class | miRNA |
Genome position | ChrA2:353823-353957 [-] |
Reference genome | Brapa_1.0 |
Source | SRR1485289 |
Length | 24 |
Mature sequence(if miRNA) | 112 - CCCUAAAUCUUGAAUCCCAAACCC - 135 |
Stem-loop(if miRNA) |
--        CU     C C       UGACU       UG      G   A    UUA      ---   C   CCCUAAAU  UGAAU C AAACCCU     GUUUUAG  UUUAGG UUU GGGU   GAAUUU   AUC A   ||||||||  ||||| | |||||||     |||||||  |||||| ||| ||||   ||||||   |||   GGGAUUUA  AUUUA G UUUGGGA     UAAGAUU  AAAUUU AGA CCCA   UUUGAG   UGG A UU        AG     A A       ---UU       UG      G   A    ---      AUU   G |
Stem-loop sequence | CCCUAAAUCUUGAAUCCCAAACCCUUGACUGUUUUAGUGUUUAGGGUUUAGGGUUUAGAAUUUAUCCAAGGGUUUAGAGUUUACCCAAGAGUUUAAAGUUUAGAAUUUAGGGUUUAGAAUUUAGAAUUUAGGGUU |