Search result

BaseInfo

ncRNA ID	novel_bra_miR131
Species	Brassica rapa
Class	miRNA
Genome position	ChrA7:17337558-17337650 [+]
Reference genome	Brapa_1.0
Source	SRR1485288;SRR1485289;SRR1592475;SRR1125021;SRR1592477;SRR1776796;SRR1776877;SRR1776880;SRR1776889;SRR1776899;SRR1485258;SRR1777714;SRR2912891;SRR1485259;SRR1485261;SRR1485262;SRR1485263
Length	22
Mature sequence(if miRNA)	1 - UUGACAGAAGAUAGAGAGCACA - 22
Stem-loop(if miRNA)	--U           -            U  -UGA      AUUU  A    UGACAGAAGAU AGAGAGCACAGA GA    GAUGCA    GG G    ||||||||||| |||||||||||| ||    ||||||    || C    ACUGUCUUCUG UCUCUCGUGUUU CU    CUACGU    UC A ACU           A            C  CAUG      AUGU  G
Stem-loop sequence	UUGACAGAAGAUAGAGAGCACAGAUGAUGAGAUGCAAUUUGGAGCAGCUUGUAUGCAUCGUACUCCUUUGUGCUCUCUAGUCUUCUGUCAUCA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_009144564.2	ncRNA:22   ACACGAGAGAUAGAAGACAGUU   1   ||||||||||*||||||||||| targets:1153   UGUGCUCUCUCUCUUCUGUCAA   1174 Target Full Sequence	1.5	PREDICTED: Brassica rapa squamosa promoter-binding-like protein 9 (LOC103866616), mRNA	squamosa promoter-binding-like protein 9(LOC103866616)	coding protein	psRNATarget
XM_009143798.2	ncRNA:22   ACACGAGAGAUAGAAGACAGUU   1   ||||||||||*||||||||||| targets:1076   UGUGCUCUCUCUCUUCUGUCAA   1097 Target Full Sequence	1.5	PREDICTED: Brassica rapa squamosa promoter-binding-like protein 9 (LOC103865930), mRNA	squamosa promoter-binding-like protein 9(LOC103865930)	coding protein	psRNATarget
XM_009105834.2	ncRNA:22   ACACGAGAGAUAGAAGACAGUU   1   ||||||||||*||||||||||| targets:744   UGUGCUCUCUCUCUUCUGUCAA   765 Target Full Sequence	1.5	PREDICTED: Brassica rapa squamosa promoter-binding-like protein 15 (LOC103830125), mRNA	squamosa promoter-binding-like protein 15(LOC103830125)	coding protein	psRNATarget
XM_009104735.2	ncRNA:22   ACACGAGAGAUAGAAGACAGUU   1   *|||||||||*||||||||||| targets:1931   AGUGCUCUCUCUCUUCUGUCAA   1952 Target Full Sequence	1.5	PREDICTED: Brassica rapa squamosa promoter-binding-like protein 10 (LOC103829068), transcript variant X1, mRNA	squamosa promoter-binding-like protein 10(LOC103829068)	coding protein	psRNATarget
XM_009104737.2	ncRNA:22   ACACGAGAGAUAGAAGACAGUU   1   *|||||||||*||||||||||| targets:1925   AGUGCUCUCUCUCUUCUGUCAA   1946 Target Full Sequence	1.5	PREDICTED: Brassica rapa squamosa promoter-binding-like protein 10 (LOC103829068), transcript variant X3, mRNA	squamosa promoter-binding-like protein 10(LOC103829068)	coding protein	psRNATarget
XM_018653833.1	ncRNA:22   ACACGAGAGAUAGAAGACAGUU   1   *|||||||||*||||||||||| targets:1769   AGUGCUCUCUCUCUUCUGUCAA   1790 Target Full Sequence	1.5	PREDICTED: Brassica rapa squamosa promoter-binding-like protein 10 (LOC103835406), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_018653131.1	ncRNA:22   ACACGAGAGAUAGAAGACAGUU   1   *|||||||||*||||||||||| targets:1738   CGUGCUCUCUCUCUUCUGUCAA   1759 Target Full Sequence	1.5	PREDICTED: Brassica rapa squamosa promoter-binding-like protein 11 (LOC103829069), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_018659841.1	ncRNA:22   ACACGAGAGAUAGAAGACAGUU   1   *|||||||||*||||||||||| targets:1556   GGUGCUCUCUCUCUUCUGUCAA   1577 Target Full Sequence	1.5	PREDICTED: Brassica rapa squamosa promoter-binding-like protein 2 (LOC103827978), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_009103544.2	ncRNA:22   ACACGAGAGAUAGAAGACAGUU   1   *|||||||||*||||||||||| targets:1211   GGUGCUCUCUCUCUUCUGUCAA   1232 Target Full Sequence	1.5	PREDICTED: Brassica rapa squamosa promoter-binding-like protein 2 (LOC103827978), transcript variant X2, mRNA	squamosa promoter-binding-like protein 2(LOC103827978)	coding protein	psRNATarget
XM_009103545.2	ncRNA:22   ACACGAGAGAUAGAAGACAGUU   1   *|||||||||*||||||||||| targets:1172   GGUGCUCUCUCUCUUCUGUCAA   1193 Target Full Sequence	1.5	PREDICTED: Brassica rapa squamosa promoter-binding-like protein 2 (LOC103827978), transcript variant X3, mRNA	squamosa promoter-binding-like protein 2(LOC103827978)	coding protein	psRNATarget
XM_009115758.2	ncRNA:22   ACACGAGAGAUAGAAGACAGUU   1   *|||||||||*||||||||||| targets:1235   GGUGCUCUCUCUCUUCUGUCAA   1256 Target Full Sequence	1.5	PREDICTED: Brassica rapa squamosa promoter-binding-like protein 2 (LOC103839253), transcript variant X1, mRNA	squamosa promoter-binding-like protein 2(LOC103839253)	coding protein	psRNATarget
XM_018654907.1	ncRNA:22   ACACGAGAGAUAGAAGACAGUU   1   *|||||||||*||||||||||| targets:1234   GGUGCUCUCUCUCUUCUGUCAA   1255 Target Full Sequence	1.5	PREDICTED: Brassica rapa squamosa promoter-binding-like protein 2 (LOC103839253), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_018659842.1	ncRNA:22   ACACGAGAGAUAGAAGACAGUU   1   *|||||||||*||||||||||| targets:1129   GGUGCUCUCUCUCUUCUGUCAA   1150 Target Full Sequence	1.5	PREDICTED: Brassica rapa squamosa promoter-binding-like protein 2 (LOC103827978), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_009104736.2	ncRNA:22   ACACGAGAGAUAGAAGACAGUU   1   *|||||||||*||||||||||| targets:1242   AGUGCUCUCUCUCUUCUGUCAA   1263 Target Full Sequence	1.5	PREDICTED: Brassica rapa squamosa promoter-binding-like protein 10 (LOC103829068), transcript variant X2, mRNA	squamosa promoter-binding-like protein 10(LOC103829068)	coding protein	psRNATarget
XM_009104738.2	ncRNA:22   ACACGAGAGAUAGAAGACAGUU   1   *|||||||||*||||||||||| targets:1299   CGUGCUCUCUCUCUUCUGUCAA   1320 Target Full Sequence	1.5	PREDICTED: Brassica rapa squamosa promoter-binding-like protein 11 (LOC103829069), transcript variant X1, mRNA	squamosa promoter-binding-like protein 11(LOC103829069)	coding protein	psRNATarget
XM_018655172.1	ncRNA:22   ACACGAGAGAUAGAAGACAGUU   1   *|||||||||*||||||||||| targets:1234   AGUGCUCUCUCUCUUCUGUCAA   1255 Target Full Sequence	1.5	PREDICTED: Brassica rapa squamosa promoter-binding-like protein 10 (LOC103839042), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_009115520.2	ncRNA:22   ACACGAGAGAUAGAAGACAGUU   1   *|||||||||*||||||||||| targets:1229   AGUGCUCUCUCUCUUCUGUCAA   1250 Target Full Sequence	1.5	PREDICTED: Brassica rapa squamosa promoter-binding-like protein 10 (LOC103839042), transcript variant X2, mRNA	squamosa promoter-binding-like protein 10(LOC103839042)	coding protein	psRNATarget
XM_009115759.2	ncRNA:22   ACACGAGAGAUAGAAGACAGUU   1   *|||||||||*||||||||||| targets:1120   GGUGCUCUCUCUCUUCUGUCAA   1141 Target Full Sequence	1.5	PREDICTED: Brassica rapa squamosa promoter-binding-like protein 2 (LOC103839253), transcript variant X2, mRNA	squamosa promoter-binding-like protein 2(LOC103839253)	coding protein	psRNATarget
XM_009111566.2	ncRNA:22   ACACGAGAGAUAGAAGACAGUU   1   *|||||||||*||||||||||| targets:1229   AGUGCUCUCUCUCUUCUGUCAA   1250 Target Full Sequence	1.5	PREDICTED: Brassica rapa squamosa promoter-binding-like protein 10 (LOC103835406), transcript variant X2, mRNA	squamosa promoter-binding-like protein 10(LOC103835406)	coding protein	psRNATarget
XM_009111568.2	ncRNA:22   ACACGAGAGAUAGAAGACAGUU   1   *|||||||||*||||||||||| targets:1224   AGUGCUCUCUCUCUUCUGUCAA   1245 Target Full Sequence	1.5	PREDICTED: Brassica rapa squamosa promoter-binding-like protein 10 (LOC103835406), transcript variant X3, mRNA	squamosa promoter-binding-like protein 10(LOC103835406)	coding protein	psRNATarget
XM_009129458.2	ncRNA:22   ACACGAGAGAUAGAAGACAGUU   1   ||||||||||*||||||||||= targets:965   UGUGCUCUCUCUCUUCUGUCAG   986 Target Full Sequence	2.5	PREDICTED: Brassica rapa squamosa promoter-binding-like protein 6 (LOC103852554), mRNA	squamosa promoter-binding-like protein 6(LOC103852554)	coding protein	psRNATarget
XM_009140754.2	ncRNA:22   ACACGAGAGAUAGAAGACAGUU   1   ||||=|||||*||||||||||| targets:792   UGUGUUCUCUCUCUUCUGUCAA   813 Target Full Sequence	2.5	PREDICTED: Brassica rapa squamosa promoter-binding-like protein 15 (LOC103863019), transcript variant X1, mRNA	squamosa promoter-binding-like protein 15(LOC103863019)	coding protein	psRNATarget
XM_009140755.2	ncRNA:22   ACACGAGAGAUAGAAGACAGUU   1   ||||=|||||*||||||||||| targets:765   UGUGUUCUCUCUCUUCUGUCAA   786 Target Full Sequence	2.5	PREDICTED: Brassica rapa squamosa promoter-binding-like protein 15 (LOC103863019), transcript variant X2, mRNA	squamosa promoter-binding-like protein 15(LOC103863019)	coding protein	psRNATarget
XM_009115522.2	ncRNA:22   ACACGAGAGAUAGAAGACAGUU   1   *|||||=|||*||||||||||| targets:1296   CGUGCUUUCUCUCUUCUGUCAA   1317 Target Full Sequence	2.5	PREDICTED: Brassica rapa squamosa promoter-binding-like protein 11 (LOC103839045), transcript variant X1, mRNA	squamosa promoter-binding-like protein 11(LOC103839045)	coding protein	psRNATarget
XM_009115524.2	ncRNA:22   ACACGAGAGAUAGAAGACAGUU   1   *|||||=|||*||||||||||| targets:1233   CGUGCUUUCUCUCUUCUGUCAA   1254 Target Full Sequence	2.5	PREDICTED: Brassica rapa squamosa promoter-binding-like protein 11 (LOC103839045), transcript variant X3, mRNA	squamosa promoter-binding-like protein 11(LOC103839045)	coding protein	psRNATarget
XM_009115523.2	ncRNA:22   ACACGAGAGAUAGAAGACAGUU   1   *|||||=|||*||||||||||| targets:1225   CGUGCUUUCUCUCUUCUGUCAA   1246 Target Full Sequence	2.5	PREDICTED: Brassica rapa squamosa promoter-binding-like protein 11 (LOC103839045), transcript variant X2, mRNA	squamosa promoter-binding-like protein 11(LOC103839045)	coding protein	psRNATarget
XM_009115526.2	ncRNA:22   ACACGAGAGAUAGAAGACAGUU   1   *|||||=|||*||||||||||| targets:1205   CGUGCUUUCUCUCUUCUGUCAA   1226 Target Full Sequence	2.5	PREDICTED: Brassica rapa squamosa promoter-binding-like protein 11 (LOC103839045), transcript variant X4, mRNA	squamosa promoter-binding-like protein 11(LOC103839045)	coding protein	psRNATarget
XM_009134452.2	ncRNA:22   ACACGAGAGAUAGAAGACAGUU   1   ||*|||||||*||||||||||* targets:1152   UGCGCUCUCUCUCUUCUGUCAU   1173 Target Full Sequence	2.5	PREDICTED: Brassica rapa squamosa promoter-binding-like protein 13A (LOC103857275), transcript variant X3, mRNA	squamosa promoter-binding-like protein 13A(LOC103857275)	coding protein	psRNATarget
XM_009134450.2	ncRNA:22   ACACGAGAGAUAGAAGACAGUU   1   ||*|||||||*||||||||||* targets:1059   UGCGCUCUCUCUCUUCUGUCAU   1080 Target Full Sequence	2.5	PREDICTED: Brassica rapa squamosa promoter-binding-like protein 13A (LOC103857275), transcript variant X1, mRNA	squamosa promoter-binding-like protein 13A(LOC103857275)	coding protein	psRNATarget
XM_009134451.2	ncRNA:22   ACACGAGAGAUAGAAGACAGUU   1   ||*|||||||*||||||||||* targets:1043   UGCGCUCUCUCUCUUCUGUCAU   1064 Target Full Sequence	2.5	PREDICTED: Brassica rapa squamosa promoter-binding-like protein 13A (LOC103857275), transcript variant X2, mRNA	squamosa promoter-binding-like protein 13A(LOC103857275)	coding protein	psRNATarget
XM_009148024.2	ncRNA:22   ACACGAGAGAUAGAAGACAGUU   1   ***|||||||*||||||||||* targets:1074   ACCGCUCUCUCUCUUCUGUCAU   1095 Target Full Sequence	2.5	PREDICTED: Brassica rapa squamosa promoter-binding-like protein 5 (LOC103869942), mRNA	squamosa promoter-binding-like protein 5(LOC103869942)	coding protein	psRNATarget
XM_009117412.2	ncRNA:22   ACACGAGAGAUAGAAGACAGUU   1   ***|||||||*||||||||||* targets:634   CCAGCUCUCUCUCUUCUGUCAU   655 Target Full Sequence	2.5	PREDICTED: Brassica rapa squamosa promoter-binding-like protein 5 (LOC103840895), mRNA	squamosa promoter-binding-like protein 5(LOC103840895)	coding protein	psRNATarget