ncRNA ID | novel_bra_miR123 |
Species | Brassica rapa |
Class | miRNA |
Genome position | ChrA3:10948972-10949111 [+] |
Reference genome | Brapa_1.0 |
Source | SRR1485288;SRR1485289;SRR1485258;SRR1485259;SRR1485260;SRR1485262;SRR1485263;SRR1485269 |
Length | 24 |
Mature sequence(if miRNA) | 1 - AGCGGAAUAUAAGAAUUUGUCUCU - 24 |
Stem-loop(if miRNA) |
--                    C C   -AC     AA            A  A   C            A   AGCGGAAUAUAAGAAUUUGU U UUA   UUUUA  UAAAAAAACUAA AA CGA UCUUAAGUAAUU A   |||||||||||||||||||| | |||   |||||  |||||||||||| || ||| ||||||||||||   UCGCCUUAUAUUCUUAAGCA A AAU   AAAAU  AUUUUUUUGAUU UU GCU AGAAUUUAUUAA A AA                    A A   CAC     -C            C  G   A            U |
Stem-loop sequence | AGCGGAAUAUAAGAAUUUGUCUCUUAACUUUUAAAUAAAAAAACUAAAAAACGACUCUUAAGUAAUUAAAUAAUUAUUUAAGAAUCGGUUCUUAGUUUUUUUACUAAAACACUAAAAAACGAAUUCUUAUAUUCCGCUAA |