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BaseInfo

ncRNA ID novel_bra_miR123
Species Brassica rapa
Class miRNA
Genome position ChrA3:10948972-10949111 [+]
Reference genome Brapa_1.0
Source SRR1485288;SRR1485289;SRR1485258;SRR1485259;SRR1485260;SRR1485262;SRR1485263;SRR1485269
Length 24
Mature sequence(if miRNA) 1 - AGCGGAAUAUAAGAAUUUGUCUCU - 24
Stem-loop(if miRNA) --                    C C   -AC     AA            A  A   C            A
  AGCGGAAUAUAAGAAUUUGU U UUA   UUUUA  UAAAAAAACUAA AA CGA UCUUAAGUAAUU A
  |||||||||||||||||||| | |||   |||||  |||||||||||| || ||| ||||||||||||
  UCGCCUUAUAUUCUUAAGCA A AAU   AAAAU  AUUUUUUUGAUU UU GCU AGAAUUUAUUAA A
AA                    A A   CAC     -C            C  G   A            U
Stem-loop sequence AGCGGAAUAUAAGAAUUUGUCUCUUAACUUUUAAAUAAAAAAACUAAAAAACGACUCUUAAGUAAUUAAAUAAUUAUUUAAGAAUCGGUUCUUAGUUUUUUUACUAAAACACUAAAAAACGAAUUCUUAUAUUCCGCUAA