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BaseInfo

ncRNA ID novel_bra_miR119
Species Brassica rapa
Class miRNA
Genome position ChrA10:1976675-1976838 [-]
Reference genome Brapa_1.0
Source SRR1485288
Length 23
Mature sequence(if miRNA) 142 - AUGUUCCAAUGUAUGACUCUAUA - 164
Stem-loop(if miRNA) --               A                        --U   AAAA            AAA    CU   U  A    C
  AUGUUCCAAUGUAUG CUCUAUAAUAGAGUUCCUCUAUUU   AGA    AAAAUAUAGAGG   GUUA  UUU CC UCUA A
  ||||||||||||||| ||||||||||||||||||||||||   |||    ||||||||||||   ||||  ||| || ||||
  UACGAGGUUACAUAC GAGAUAUUAUCUCAAGGAGAUAAA   UCU    UUUUAUAUCUCU   CGAU  AAG GG AGAU U
UU               G                        UAU   ---C            AUA    AU   U  -    U
Stem-loop sequence AUGUUCCAAUGUAUGACUCUAUAAUAGAGUUCCUCUAUUUUAGAAAAAAAAAUAUAGAGGAAAGUUACUUUUUCCAUCUACAUUUAGAGGUGAAUAUAGCAUAUCUCUAUAUUUUCUCUUAUAAAUAGAGGAACUCUAUUAUAGAGGCAUACAUUGGAGCAUUU