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BaseInfo

ncRNA ID novel_bra_miR118
Species Brassica rapa
Class miRNA
Genome position ChrA2:8681960-8682079 [-]
Reference genome Brapa_1.0
Source SRR1160826
Length 24
Mature sequence(if miRNA) 97 - AAACCCUUGGGUAAACCCUGAACC - 120
Stem-loop(if miRNA) --                                        A  G  AAUCAAAAAUAU
  AAACCCUUGGGUAAACCCUGAACCCUUGGAUAAAUCAUAA CU UA            U
  |||||||||||||||||||||||||||||||||||||||| || ||
  UUUGGGAACCUAUUUGGGACUUGGGAACCUAUUUAGUAUU GA AU            U
GA                                        A  G  CUCAAAUUAAAA
Stem-loop sequence AAACCCUUGGGUAAACCCUGAACCCUUGGAUAAAUCAUAAACUGUAAAUCAAAAAUAUUUAAAAUUAAACUCUAGAGAUUAUGAUUUAUCCAAGGGUUCAGGGUUUAUCCAAGGGUUUAG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_009149586.2
ncRNA:24   CCAAGUCCCAAAUGGGUUCCCAAA   1
  *|||=*||||||=|||||||||||
targets:1412   AGUUUCGGGUUUGCCCAAGGGUUU   1435

2.5 PREDICTED: Brassica rapa uncharacterized LOC103871342 (LOC103871342), mRNA uncharacterized LOC103871342(LOC103871342) coding protein psRNATarget