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BaseInfo

ncRNA ID novel_bra_miR117
Species Brassica rapa
Class miRNA
Genome position ChrA9:5534769-5534991 [+]
Reference genome Brapa_1.0
Source SRR1485288;SRR1485261;SRR1485263;SRR1485265;SRR1485275;SRR1485283
Length 24
Mature sequence(if miRNA) 1 - AUAUACCGACGGAGACGGAUCCUC - 24
Stem-loop(if miRNA) --A                                                                                               AUG         UA
   UAUACCGACGGAGACGGAUCCUCCGAAGAUUCCGACGAACUAAGUCCUCGGUAAAUACCGACGGACUAUGAUUCGUCGGUAAAUACCGACGGACU   AUUUGUCGG  A
   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||
   AUAUGGCUGCCUCUGCCUAGGAGGCUUCUAAGGCUGCUUGAUUCAGGAGCCAUUUAUGGCUGCCUGAUACUAAGCAGCCAUUUAUGGCUGCCUGA   UAAGCAGCC  A
AAG                                                                                               -AA         UU
Stem-loop sequence AUAUACCGACGGAGACGGAUCCUCCGAAGAUUCCGACGAACUAAGUCCUCGGUAAAUACCGACGGACUAUGAUUCGUCGGUAAAUACCGACGGACUAUGAUUUGUCGGUAAAUUCCGACGAAUAAAGUCCGUCGGUAUUUACCGACGAAUCAUAGUCCGUCGGUAUUUACCGAGGACUUAGUUCGUCGGAAUCUUCGGAGGAUCCGUCUCCGUCGGUAUAGAA