ncRNA ID | novel_bra_miR117 |
Species | Brassica rapa |
Class | miRNA |
Genome position | ChrA9:5534769-5534991 [+] |
Reference genome | Brapa_1.0 |
Source | SRR1485288;SRR1485261;SRR1485263;SRR1485265;SRR1485275;SRR1485283 |
Length | 24 |
Mature sequence(if miRNA) | 1 - AUAUACCGACGGAGACGGAUCCUC - 24 |
Stem-loop(if miRNA) |
--A                                                                                               AUG         UA    UAUACCGACGGAGACGGAUCCUCCGAAGAUUCCGACGAACUAAGUCCUCGGUAAAUACCGACGGACUAUGAUUCGUCGGUAAAUACCGACGGACU   AUUUGUCGG  A    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||    AUAUGGCUGCCUCUGCCUAGGAGGCUUCUAAGGCUGCUUGAUUCAGGAGCCAUUUAUGGCUGCCUGAUACUAAGCAGCCAUUUAUGGCUGCCUGA   UAAGCAGCC  A AAG                                                                                               -AA         UU |
Stem-loop sequence | AUAUACCGACGGAGACGGAUCCUCCGAAGAUUCCGACGAACUAAGUCCUCGGUAAAUACCGACGGACUAUGAUUCGUCGGUAAAUACCGACGGACUAUGAUUUGUCGGUAAAUUCCGACGAAUAAAGUCCGUCGGUAUUUACCGACGAAUCAUAGUCCGUCGGUAUUUACCGAGGACUUAGUUCGUCGGAAUCUUCGGAGGAUCCGUCUCCGUCGGUAUAGAA |