Search result

BaseInfo

ncRNA ID novel_bra_miR113
Species Brassica rapa
Class miRNA
Genome position ChrA8:12974686-12974839 [-]
Reference genome Brapa_1.0
Source SRR1485288
Length 22
Mature sequence(if miRNA) 1 - UUAUAGAGGCAUUCAUUGGAGC - 22
Stem-loop(if miRNA) --       U                      C     A              A  --    -   A    C       A
  UCCAAUG AUGCCUCUAUAAUAGAGUUCCU UAUUU UAGGGGAAAAUAUA AG  AUCU GCU UUUU AUCUCUA A
  ||||||| |||||||||||||||||||||| ||||| |||||||||||||| ||  |||| ||| |||| |||||||
  AGGUUAC UACGGAGAUAUUAUCUCAAGGA AUAAA AUCUCCUUUUAUAU UC  UAGA UGA AAAA UGGAGAU U
CG       U                      U     -              C  CU    A   -    -       A
Stem-loop sequence UCCAAUGUAUGCCUCUAUAAUAGAGUUCCUCUAUUUAUAGGGGAAAAUAUAAAGAUCUGCUAUUUUCAUCUCUAAAUAUAGAGGUAAAAAGUAAGAUUCCUCUAUAUUUUCCUCUAAAAUAUAGGAACUCUAUUAUAGAGGCAUUCAUUGGAGC